View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_36 (Length: 422)

Name: NF1246_low_36
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_36
NF1246_low_36
[»] chr2 (2 HSPs)
chr2 (30-361)||(29647917-29648265)
chr2 (148-325)||(21094039-21094215)
[»] chr5 (1 HSPs)
chr5 (87-357)||(21942704-21942972)
[»] chr4 (6 HSPs)
chr4 (152-357)||(33573235-33573439)
chr4 (87-185)||(30914967-30915062)
chr4 (257-342)||(28091803-28091889)
chr4 (278-342)||(21212146-21212210)
chr4 (134-207)||(21212013-21212085)
chr4 (281-357)||(33573583-33573659)
[»] chr7 (1 HSPs)
chr7 (196-334)||(9455384-9455522)
[»] chr1 (5 HSPs)
chr1 (131-207)||(16572214-16572290)
chr1 (155-226)||(17051472-17051543)
chr1 (155-226)||(17061602-17061672)
chr1 (284-342)||(16572089-16572147)
chr1 (168-220)||(17051917-17051969)
[»] chr8 (1 HSPs)
chr8 (173-235)||(25234939-25234997)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 361
Target Start/End: Original strand, 29647917 - 29648265
Alignment:
Q  30 ttcagcattttagtggaagtttgaggaagagacattttcttcta-tgaagacagaattgatgtacacttagcgaggacaaaaagggta------------ 116  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||                
T  29647917 ttcaacattttagtggaagtttaaggaagatacattttcttctaatgaagacaggattgatgtacacttagcgaagacaaaaagggtaatctctataaat 29648016  T
Q  117 ----atctctataaatcgttggtgttatcttttccttaactctttaatttcaacaaattaactttgatatatgatgtttattaattagcttaattaccat 212  Q
        |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29648017 ggtaatctctataaatcgttggtgttatcttttccttaactctttaatttcagcaaattaactttgatatatgatgtttattaattagcttaattaccat 29648116  T
Q  213 atgattatgattgaatattttcctaaaacatcatttccattgatcattgttgatatcaatacatcatcaattcaatcaccttgcatatttgagatttact 312  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29648117 atgattctgattgaatattttcctaaaacatcatttccattgatcattgttgatatcaatacatcatcaattcaatcaccttgcatatttgagatttact 29648216  T
Q  313 tgttgataatcttatctcatatatcaaagtagcttatttcttgtgatag 361  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29648217 tgttgataatcttatctcgtatatcaaagtagcttatttcttgtgatag 29648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 325
Target Start/End: Original strand, 21094039 - 21094215
Alignment:
Q  148 ttaactctttaatttcaacaaattaactttgatatatgatgtttattaattagcttaattaccatatgattatgattgaatattttcctaaaacatcatt 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||| |||||||| ||||||| | |||    
T  21094039 ttaactctttaatttcaacaa-ttaactttgatatatgatgtttattgattagcttaattaccatatgattgcgattaaatatttttctaaaacctaatt 21094137  T
Q  248 tccattgatcattgttgatatcaatacatcatcaattcaatcaccttgcatatttgagatttacttgttgataatctt 325  Q
    |||||||||||||||||  |||||||||||| |||||||||||| || ||||||  ||||| ||||||||||||||||    
T  21094138 tccattgatcattgttgtgatcaatacatcaccaattcaatcacattacatattgaagattaacttgttgataatctt 21094215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 87 - 357
Target Start/End: Original strand, 21942704 - 21942972
Alignment:
Q  87 gatgtacacttagcgaggacaaaaagggtaatc-tctataaatcgttggtgttatcttttcctt-aactctttaatttcaacaaattaactttgatatat 184  Q
    ||||||| |||| ||||||  ||||||| || | ||||||||||  ||||||| |||| ||||| ||||||||||||||||||| | |||||||||||||    
T  21942704 gatgtacccttaacgaggatgaaaaggggaaacctctataaatctctggtgttctcttctcctttaactctttaatttcaacaa-tgaactttgatatat 21942802  T
Q  185 gatgtttattaattagcttaattaccatatgattatgattgaatattttcctaaaacatcatttccattgatcattgttgatatcaatacatcatcaatt 284  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||||| |   |||   | ||||||| | |||||    
T  21942803 gatgtttattgattagcttaattaccatatgattgtaattgaatattttcctaaaacctaatttccattgataacaattg---tgaatacattaccaatt 21942899  T
Q  285 caatcaccttgcatatttgagatttacttgttgataatcttatctcatatatcaaagtagcttatttcttgtg 357  Q
    |||| |||||||||||  |||||| ||||||||||||||||   ||||||||||| ||| | |||||| ||||    
T  21942900 caatgaccttgcatatcggagattgacttgttgataatcttccttcatatatcaaggtaacatatttcctgtg 21942972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 357
Target Start/End: Original strand, 33573235 - 33573439
Alignment:
Q  152 ctctttaatttcaacaaattaactttgatatatgatgtttattaattagcttaattaccatatgattatgattgaatattttcctaaaacatcatttcca 251  Q
    |||||||||||||| || ||||||||||| ||||||||||||| |||| ||||||||||| |||||| |||||||||||||||| ||||| | |||||||    
T  33573235 ctctttaatttcaataa-ttaactttgatgtatgatgtttattgattatcttaattaccacatgattgtgattgaatattttccaaaaacctaatttcca 33573333  T
Q  252 ttgatcattgttgatatcaatacatcatcaattcaatcaccttgcatatttgagatttacttgttgataatcttatctcatatatcaaagtagcttattt 351  Q
     |||||||| |||  ||||| | |||| |||||||| |||||| |||||| |||||| ||||||| ||||||||   || | |||||||||||||||||     
T  33573334 ctgatcattattgtgatcaacatatcaccaattcaaccaccttacatattggagattaacttgtttataatcttccttcgtgtatcaaagtagcttattc 33573433  T
Q  352 cttgtg 357  Q
    ||||||    
T  33573434 cttgtg 33573439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 30914967 - 30915062
Alignment:
Q  87 gatgtacacttagcgaggacaaaaagggtaatctctataaatcgttggtgttatcttttccttaactctttaatttcaacaaattaactttgatatatg 185  Q
    ||||||| |||||||||||| | |||| |||| ||||||||||  | ||||| | |||||||| ||||||||||||||||||||| |||||||||||||    
T  30914967 gatgtacccttagcgaggacgataagg-taatttctataaatc--tagtgttctattttcctttactctttaatttcaacaaatttactttgatatatg 30915062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 28091889 - 28091803
Alignment:
Q  257 cattgttgatatcaatacatc-atcaattcaatcaccttgcatatttgagatttacttgttgataatcttatctcatatatcaaagt 342  Q
    |||||||||||| |||||||  || |||||||||||||| |||||| |||||| ||||||||||||| | ||| |||||||||||||    
T  28091889 cattgttgatattaatacatttattaattcaatcacctttcatattagagattaacttgttgataatttcatcacatatatcaaagt 28091803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 21212146 - 21212210
Alignment:
Q  278 atcaattcaatcaccttgcatatttgagatttacttgttgataatcttatctcatatatcaaagt 342  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||||| ||| ||||||| |||||    
T  21212146 atcaattcaatcacctttcatattagagattaacttgttgataatctcatcgcatatattaaagt 21212210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 21212013 - 21212085
Alignment:
Q  134 gtgttatcttttccttaactctttaatttcaacaaattaactttgatatatgatgtttattaattagcttaatt 207  Q
    ||||| ||||||||||| ||||||||||||  |||||| |||||||||||||||||| ||  ||||| ||||||    
T  21212013 gtgttctcttttcctta-ctctttaatttctgcaaatttactttgatatatgatgttgatggattaggttaatt 21212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 33573583 - 33573659
Alignment:
Q  281 aattcaatcaccttgcatatttgagatttacttgttgataatcttatctcatatatcaaagtagcttatttcttgtg 357  Q
    ||||||| |||||| |||||| |||||| ||||||| ||||||||   || | ||||||||||||||||| ||||||    
T  33573583 aattcaaccaccttacatattggagattaacttgtttataatcttccttcgtctatcaaagtagcttattccttgtg 33573659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 9455522 - 9455384
Alignment:
Q  196 attagcttaattaccatatgattatgattgaatattttcctaaaacatcatttccattgatcattgttgatatcaatacatcatcaattcaatcaccttg 295  Q
    |||||| |||||| ||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||   ||||||| |||| ||||||||||||||||    
T  9455522 attagcataattatcatatgattgtgattgaatattttcctaaaacataattttcattgattattgttttgatcaatatatcaccaattcaatcaccttg 9455423  T
Q  296 catatttgagatttacttgttgataatcttatctcatat 334  Q
    |||||| |||||| |||||||||||||||| ||||||||    
T  9455422 catattggagattaacttgttgataatcttctctcatat 9455384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 16572290 - 16572214
Alignment:
Q  131 ttggtgttatcttttccttaactctttaatttcaacaaattaactttgatatatgatgtttattaattagcttaatt 207  Q
    |||| ||| |||||||||| || ||||||||||  |||||| |||||||||||||||||| ||||| ||| ||||||    
T  16572290 ttggcgttctcttttcctttacactttaatttctccaaatttactttgatatatgatgttgattaactaggttaatt 16572214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 17051543 - 17051472
Alignment:
Q  155 tttaatttcaacaaattaactttgatatatgatgtttattaattagcttaattaccatatgattatgattga 226  Q
    |||||||||| ||| |||  | ||||||| |||||||||| ||||| ||||||||||||| ||| |||||||    
T  17051543 tttaatttcagcaatttacttatgatatacgatgtttattgattagattaattaccatataattgtgattga 17051472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 17061602 - 17061672
Alignment:
Q  155 tttaatttcaacaaattaactttgatatatgatgtttattaattagcttaattaccatatgattatgattga 226  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||| ||  ||||||  ||||| |||||||    
T  17061602 tttaatttcaacaattta-ctttgatatatgatgtttattgattagattggttaccacgtgattgtgattga 17061672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 16572147 - 16572089
Alignment:
Q  284 tcaatcaccttgcatatttgagatttacttgttgataatcttatctcatatatcaaagt 342  Q
    ||||||||||| |||||| |||||| ||| |||||| |||| ||| |||||||||||||    
T  16572147 tcaatcacctttcatattagagattaactagttgattatctcatcacatatatcaaagt 16572089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 17051969 - 17051917
Alignment:
Q  168 aattaactttgatatatgatgtttattaattagcttaattaccatatgattat 220  Q
    |||| ||||| |||||||||||||||| ||||  ||| |||||||||||||||    
T  17051969 aatttactttaatatatgatgtttattgattaaattagttaccatatgattat 17051917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 25234939 - 25234997
Alignment:
Q  173 actttgatatatgatgtttattaattagcttaattaccatatgattatgattgaatattttcc 235  Q
    |||||||||||||||| ||||||    || |||||||||||||||| ||||||| ||||||||    
T  25234939 actttgatatatgatgcttatta----gcataattaccatatgattgtgattgattattttcc 25234997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University