View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_37 (Length: 413)
Name: NF1246_low_37
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 39954979 - 39954823
Alignment:
| Q |
101 |
ccttttgcgcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39954979 |
ccttttgcgcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttcagttcaagcttcag |
39954880 |
T |
|
| Q |
201 |
tgtttcattccctttcttgagttcatctgtttcttccctcagcttcattgcttcatt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39954879 |
tgtttcattccctttcttgagttcatctgtttcttccctcagcttcattacttcatt |
39954823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 250 - 398
Target Start/End: Complemental strand, 39954971 - 39954823
Alignment:
| Q |
250 |
gcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39954971 |
gcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttcagttcaagcttcagtgtttcat |
39954872 |
T |
|
| Q |
350 |
tccctttcttgagttcatctgtttcttccctcagcttcattgcttcatt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39954871 |
tccctttcttgagttcatctgtttcttccctcagcttcattacttcatt |
39954823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 387
Target Start/End: Complemental strand, 39954786 - 39954648
Alignment:
| Q |
249 |
tgcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttca |
348 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||| ||| |||||||||||| ||||||| ||| |||||| || |||||| || |||| ||| | | |
|
|
| T |
39954786 |
tgcttcattttctttctcgagttgtttaatctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcatta |
39954687 |
T |
|
| Q |
349 |
ttccctttcttgagttcatctgtttcttccctcagcttc |
387 |
Q |
| |
|
||| ||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
39954686 |
ttcactttcttcagttgttctatttcttccctcaacttc |
39954648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 246
Target Start/End: Complemental strand, 39954785 - 39954648
Alignment:
| Q |
109 |
gcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcat |
208 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||| |||||||||||| ||||||| ||| |||||| || |||||| || |||| ||| | || |
|
|
| T |
39954785 |
gcttcattttctttctcgagttgtttaatctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattat |
39954686 |
T |
|
| Q |
209 |
tccctttcttgagttcatctgtttcttccctcagcttc |
246 |
Q |
| |
|
|| ||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
39954685 |
tcactttcttcagttgttctatttcttccctcaacttc |
39954648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University