View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_38 (Length: 410)
Name: NF1246_low_38
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 399
Target Start/End: Complemental strand, 31944165 - 31943775
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctannnnnnnnnattcaatgttga--- |
125 |
Q |
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| T |
31944165 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctatttttttttattcaatgttgaatg |
31944066 |
T |
|
| Q |
126 |
------taaattt-----gtgttttcttatattttacttgatttcatgagtttggtccttnnnnnnnn---tgttgaatgtttgctgttttaggatttat |
211 |
Q |
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| T |
31944065 |
tttgcttatattttacttgtgttttcttatattttacttgatttcatgagtttagtccttcaaaaaaaaaatgttgaatgtttgctgttttaggatttat |
31943966 |
T |
|
| Q |
212 |
ttctatgattgcatgttgaaaattcggtgtttatgttattttgtttgattt-atgttgaaagnnnnnnnnnnn--agggtttatttcttcacatgttgaa |
308 |
Q |
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| T |
31943965 |
ttctatgattacatgttgaaaattcggtgtttatgttattttgtttgattttatgttgaaagtttttttttttttagggtttatttcttcatatgttgaa |
31943866 |
T |
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| Q |
309 |
aattttgttttcagggtttatttcttcatgttggaaattatattttaattgacatgatttcatgctgaaaattgtttgttttatggttcat |
399 |
Q |
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| T |
31943865 |
aattttgttttcagggtttatttcttcatgttggaaattatattttaattgacatgatttcttgctgaaaattgtgtgttttatggttcat |
31943775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 1342194 - 1342060
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctannnnnnnnnattcaatgttgataa |
128 |
Q |
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||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
1342194 |
aagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattttattttattaaatgttgataa |
1342095 |
T |
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| Q |
129 |
atttgtg-ttttcttatattttacttgatttcatg |
162 |
Q |
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||||||| |||| || |||||||||| |||||||| |
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| T |
1342094 |
atttgtgcttttgttttattttactttatttcatg |
1342060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 399
Target Start/End: Complemental strand, 1341981 - 1341881
Alignment:
| Q |
301 |
atgttgaaaattttgttttc-agggtttatttcttcatgttggaaattatattttaatt-gacatgatttcatgctgaaaattgtttgttttatggttca |
398 |
Q |
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| T |
1341981 |
atgttcaaaattttgttttttagggtttatttcttcttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttca |
1341882 |
T |
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| Q |
399 |
t |
399 |
Q |
| |
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| |
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| T |
1341881 |
t |
1341881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 1342052 - 1341983
Alignment:
| Q |
192 |
tttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgt-ttatgttattttgtttgattt |
262 |
Q |
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|||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
1342052 |
tttggtgttttagggtttatttctttgattgcatgttgaaaatt--gtgtattatgttattttgtttgattt |
1341983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 9394653 - 9394578
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta |
104 |
Q |
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| T |
9394653 |
aagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttcta |
9394578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 9394534 - 9394445
Alignment:
| Q |
183 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttga-tttatgttgaaa |
271 |
Q |
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||||||| |||| ||||||||| ||||||||| ||||| ||||||| || | || ||||||||||||||||||| |||||||||||| |
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| T |
9394534 |
tgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaa |
9394445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 35535477 - 35535403
Alignment:
| Q |
30 |
agtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta |
104 |
Q |
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||||||| |||||||||||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||| |
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| T |
35535477 |
agtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaaggtttcta |
35535403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 5644370 - 5644299
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtt |
100 |
Q |
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|||||||| |||||||||| ||| ||||||||| || | ||||||||| | |||||||||||||| |||||| |
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| T |
5644370 |
aagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgttaaggtt |
5644299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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