View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_4 (Length: 637)
Name: NF1246_low_4
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 68 - 637
Target Start/End: Original strand, 37290096 - 37290665
Alignment:
| Q |
68 |
tggtttaaatgttttttctattgccaagaatcttggaatgatgactagtggttatgtgtggattgcaacagattggcttccttcaaagttggattcaatg |
167 |
Q |
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| T |
37290096 |
tggtttaaatgttttttctattgccaagaatcttggaatgatgactagtggttatgtgtggattgcaacagattggcttccttcaaagttggattcaatg |
37290195 |
T |
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| Q |
168 |
gatccagttgatactaacacattgaaactccttcaaggtgttgtagctttgaggcatcacactcctgatacaaatctcaaaaagagttttttctcaaggt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37290196 |
gatccagttgatactaacacattgaaactccttcaaggtgttgtagctttgaggcatcacactcctgatacaaatctcaaaaagagttttttctccaggt |
37290295 |
T |
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| Q |
268 |
tgaagaacgtaaacggcacggaaactacaagcttcaattcttatgctttatatgcatatgattctgtttggttagcagcttatgctcttgatgcttttct |
367 |
Q |
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| T |
37290296 |
tgaagaacgtaaacggcacggcaactacaagcttcaattcttatgctttatatgcatatgattctgtttggttagcagcttatgctcttgatgcttttct |
37290395 |
T |
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| Q |
368 |
caaagaaggtggaaacatatctttctcatctgaccctaagctgattgacacaaaaggaagcatgttgcatttgtcttcgcttcgcgttttcaatggcggt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37290396 |
caaagaaggtggaaacatatctttctcatctgaccctaagctgattgacacaaaaggaagcatgttgcatttgtcttcgcttcgcgttttcaatggtggt |
37290495 |
T |
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| Q |
468 |
ccagactttctccctacacttttgagagtgaacttcaccggtttgagtggtcagattcagttcaatggagacaagaatctaattcgtccatcatatgata |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37290496 |
ccagactttctccctacacttttgagagtgaacttcaccggtttgagtggtcagattcagttcaatggagacaagaatctaattcgtccatcatatgata |
37290595 |
T |
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| Q |
568 |
tccttaacatcggtgaatcttgcttccggagagtcggttattggtctcattactccggtctatcagtttt |
637 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37290596 |
tccttaacatcggtgaatctggtttccggagagtcggttattggtctaattactccggtctatcagtttt |
37290665 |
T |
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