View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_41 (Length: 403)
Name: NF1246_low_41
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 768979 - 768781
Alignment:
| Q |
17 |
tgtggatggagagaaacagtagtaacacacaaaacatactgtttctaaagtatacatatggttgttcaaattgacaaaaacaatatgtaaagaaagattg |
116 |
Q |
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| T |
768979 |
tgtggatggatagaaacagtagtaacacacaaaacatactgtttctaaagtatacatatggttgttcaaattgacaaaaacaatatgtaaagaaagattg |
768880 |
T |
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| Q |
117 |
tggcagatatgcatgggtatcnnnnnnntatggtaattaagagtcgagtacagcaacatggtaagtaaaattgacaatgtcgaaattgtaagattggac |
215 |
Q |
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| T |
768879 |
tggcagatatgcatgggaataaaaaaaatatggtaattaagagtcgagtacagcaacatggtaagtaaaattgacaatgtcgaaattgtaagattggac |
768781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 768739 - 768631
Alignment:
| Q |
266 |
ttgggaaccatgggatacgatcacatgaatataaaaattnnnnnnnnnnnnnntgagatacgaaaggaagtttttgtttatactttgggaacagattatt |
365 |
Q |
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| T |
768739 |
ttgggaaccatgggatacgatcacatgaatataaaaattaaaaaaaaaaaaaa-gagatacgaaaggaagtttttgtttatactttgggaacagattatt |
768641 |
T |
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| Q |
366 |
ggagaagaat |
375 |
Q |
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| T |
768640 |
ggagaagaat |
768631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 9594954 - 9594914
Alignment:
| Q |
335 |
gtttttgtttatactttgggaacagattattggagaagaat |
375 |
Q |
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| T |
9594954 |
gtttttgtttatactttggggactgattattggacaagaat |
9594914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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