View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_42 (Length: 396)
Name: NF1246_low_42
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 48 - 382
Target Start/End: Complemental strand, 40442285 - 40441952
Alignment:
| Q |
48 |
atgtccaagaatattgatcaagttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttag |
147 |
Q |
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| T |
40442285 |
atgtccaa-aatattgatcaagttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttag |
40442187 |
T |
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| Q |
148 |
tttctatcatactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaat |
247 |
Q |
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| T |
40442186 |
tttctatcatactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaat |
40442087 |
T |
|
| Q |
248 |
gataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagatacctaccagaatgcaggatataaaccag |
347 |
Q |
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| T |
40442086 |
gataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagatacctaccagaatgcaggatataaaccag |
40441987 |
T |
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| Q |
348 |
ttagatgactatgcatgaccgaccaaggagcaata |
382 |
Q |
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| T |
40441986 |
ttagatgactatgcatgaccgaccaaggagcaata |
40441952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 18812934 - 18812828
Alignment:
| Q |
193 |
attttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaa |
292 |
Q |
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||||||||||||||||||||| | |||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| |
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| T |
18812934 |
attttgtgaagaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaa |
18812835 |
T |
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| Q |
293 |
aggttct |
299 |
Q |
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| T |
18812834 |
atgttct |
18812828 |
T |
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