View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_44 (Length: 381)
Name: NF1246_low_44
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 53805887 - 53805596
Alignment:
| Q |
1 |
acgtggcacacatgtattccctcagaacacttggccctactctccttcatttcttcaagcaatttgaagatttttctggcgaaaccaaaccatcactctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53805887 |
acgtggcacacatgtattccctcagaacacttggccctactctccttcatttcttcaagcaatttgaagatttttctggcgaaaccaaaccatcactctc |
53805788 |
T |
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| Q |
101 |
aaaatcaccacctccaccacgctcaaaatcatcttttagttctgattcagatgctgaacacgtcccactgcattctgaatcagaaccagaaccggaggat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53805787 |
aaaatcaccacctccaccacgctcaaaatcatcttctagttctgattcagatgctgaacacgtcccgctgcattctgaatcagaaccagaaccggaggat |
53805688 |
T |
|
| Q |
201 |
acagaagaaaattctcaattatgcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcctgatgatgt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53805687 |
acagaagaaaattctcaattatgcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcctgataatgt |
53805596 |
T |
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