View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_50 (Length: 360)
Name: NF1246_low_50
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 123 - 332
Target Start/End: Complemental strand, 32726377 - 32726168
Alignment:
| Q |
123 |
ctgggttcccaacgacattaactactgtgactccatttatgtcataggtaaaataataacacctttcataatgaataatctacataattaagggaatatt |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32726377 |
ctgggttcccaacgacactaactactgtgactccatttatgtcataggtaaaataataacacctttcataatgaataatctacataattaagggaatatt |
32726278 |
T |
|
| Q |
223 |
caaagaagtcgcacaacacttagtatggtccataatgaggaaaataacagtgtttatacatacatgtcttctaatcaatgcatccatcatgttatatata |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32726277 |
caaagaagtcgcacaacacttagtatggtccataatgaggaaaataacagtgtttatacatacatgtcttctaatcaatgcatccatcatgttatatata |
32726178 |
T |
|
| Q |
323 |
tgggtgtgtg |
332 |
Q |
| |
|
|||||||||| |
|
|
| T |
32726177 |
tgggtgtgtg |
32726168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University