View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_51 (Length: 356)
Name: NF1246_low_51
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 3754991 - 3755157
Alignment:
| Q |
1 |
ttcagaaacttctgtcattttcatttatattatttgtttgttatttggnnnnnnnnnctctcatcatacattacatttgatatagttcacaattttgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3754991 |
ttcagaaacttctgtcattttcatttatattatttgtttgttatttggttttttt---tctc-tcatacattacatttgatatagttcacaattttgcaa |
3755086 |
T |
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| Q |
101 |
tgtatgctcaaaggatacggaaattttataatgttgagccaaatgaattacttatactgaactggttttcta |
172 |
Q |
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| T |
3755087 |
tgtatgctcaa-ggatgcagaaattttataatgttgagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 4141507 - 4141430
Alignment:
| Q |
136 |
gagccaaatgaattacttatactgaactggttttctatcaactaagatactatagtgtctcaagagttaactattgca |
213 |
Q |
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| T |
4141507 |
gagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgca |
4141430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 4157662 - 4157621
Alignment:
| Q |
218 |
aatcattattaatttgctagatttgcttacttttctgttttt |
259 |
Q |
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| T |
4157662 |
aatcatttttaatttgctagatttgcttacttttctgttttt |
4157621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4141818 - 4141776
Alignment:
| Q |
1 |
ttcagaaacttctgtcattttcatttatattatttgtttgtta |
43 |
Q |
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| T |
4141818 |
ttcagaaattgctgtcattttcatttatattatttctttgtta |
4141776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11082209 - 11082305
Alignment:
| Q |
1 |
ttcagaaacttctgtcattttcatttatattatttgtttgttatttggnnnnnnnnnctctcatcatacattacatttgatatagttcacaattttgca |
99 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11082209 |
ttcagaaatttctgtcattttcatttatattatttgtttgtcaga--ggtttttgttctctcatcatacattacatttgatatagttcacaattatgca |
11082305 |
T |
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