View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_55 (Length: 349)

Name: NF1246_low_55
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_55
NF1246_low_55
[»] chr5 (1 HSPs)
chr5 (38-335)||(36199276-36199573)
[»] chr7 (2 HSPs)
chr7 (66-326)||(28449405-28449665)
chr7 (163-218)||(12635951-12636006)
[»] chr1 (2 HSPs)
chr1 (71-330)||(48675085-48675344)
chr1 (158-231)||(41662527-41662600)
[»] chr2 (6 HSPs)
chr2 (166-269)||(410494-410600)
chr2 (159-214)||(996740-996795)
chr2 (131-217)||(821405-821491)
chr2 (157-217)||(973725-973785)
chr2 (163-217)||(1403805-1403859)
chr2 (42-99)||(821523-821579)
[»] chr3 (3 HSPs)
chr3 (167-213)||(43360019-43360065)
chr3 (163-217)||(45810203-45810257)
chr3 (48-95)||(45810090-45810135)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 36199573 - 36199276
Alignment:
Q  38 gaaagaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctat 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36199573 gaaagaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtttttgatgccattggaattaaggatagttccttttctat 36199474  T
Q  138 ttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctaca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199473 ttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctaca 36199374  T
Q  238 aaagcgaagtcctgaatagtgcaagttctaagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcctccttc 335  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36199373 aaagcgaagtcccgaatagtgcaagttctaagatataatgaaagaaattgtggagtggattttggatccacccaattttcttgttcttttcctccttc 36199276  T

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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 326
Target Start/End: Original strand, 28449405 - 28449665
Alignment:
Q  66 tatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatatt 165  Q
    |||| ||||||||||||||||||||||||||||| | |||||| |||||  | |||||| |||| |||||||||||||||||||||| |||||||||||     
T  28449405 tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc 28449504  T
Q  166 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttc 265  Q
     |||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||| || |||||| ||||||||||||||     
T  28449505 atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtcattttgtaggtctacaaatgcaaagtcccgaatagtgcaagttg 28449604  T
Q  266 taagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttt 326  Q
    |||||| |||||| ||  |||||||||  ||| |||| |  |||||||||| |||| ||||    
T  28449605 taagatgtaatgagaggcattgtggagcagatgttgggtttacccaactttgttgtccttt 28449665  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 12636006 - 12635951
Alignment:
Q  163 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataag 218  Q
    |||||||| |||||||||||||||||||| || | |||||| ||||||| ||||||    
T  12636006 attgtcatggtttgtaaaactcttgcattcttcaaaatataccttgctagcataag 12635951  T

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Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 71 - 330
Target Start/End: Original strand, 48675085 - 48675344
Alignment:
Q  71 gttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcat 170  Q
    ||||||||||||||||||||||||| |||   || ||| |||||  | |||||| |||| |||||||||||||||| || ||||| ||||||||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  171 agtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttctaaga 270  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |  || ||||||||   ||| |  |||||| |||||||||| |||||||||    
T  48675185 agtttgtaaaacttttgcattatttagaatatatcttgctaacataatattatgctgtaggtcactaaaggtaaagtcccgaatagtgcaggttctaaga 48675284  T
Q  271 tataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcct 330  Q
     |||||  |||  ||||||||| | | || || |||||||||||||||||||||| ||||    
T  48675285 gataattgaaggcattgtggagggaacttagggtccacccaactttcttgttcttgtcct 48675344  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 41662527 - 41662600
Alignment:
Q  158 tccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtagg 231  Q
    |||| ||| |||| |||||||||||||||||||| || | || ||| ||||||| |||||| |||| |||||||    
T  41662527 tccagattttcatggtttgtaaaactcttgcattcttcaaaacataccttgctagcataagctcgtcttgtagg 41662600  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 410600 - 410494
Alignment:
Q  166 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaag 262  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||| ||||||||||||    
T  410600 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaag 410501  T
Q  263 ttctaag 269  Q
    || ||||    
T  410500 ttgtaag 410494  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 996740 - 996795
Alignment:
Q  159 ccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaaca 214  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  996740 ccatattttcatggtttgtaaaagtcttgcattctttagaatatatcttgctaaca 996795  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 821491 - 821405
Alignment:
Q  131 tttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 217  Q
    ||||||||| || |||||  ||||  ||||| ||||||||||||| ||||||||| ||||| || |||||| || ||||||||||||    
T  821491 tttctatttcagattgtttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa 821405  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 973725 - 973785
Alignment:
Q  157 ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 217  Q
    ||||| ||| |||||||||||||||||||||| || |  |||||| |||||||||||||||    
T  973725 ctccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataa 973785  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 1403859 - 1403805
Alignment:
Q  163 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 217  Q
    |||| |||||||| |||||||||||||||||  |||||| | |||||||||||||    
T  1403859 attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataa 1403805  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 821579 - 821523
Alignment:
Q  42 gaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtt 99  Q
    ||||| || |||||||||| ||| ||||||||||||||||| |||||||||||| |||    
T  821579 gaaaaataatacttacata-atcgtatatgttatcaataaaatgaaagttgacatgtt 821523  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 43360065 - 43360019
Alignment:
Q  167 tcatagtttgtaaaactcttgcattatttagaatatatcttgctaac 213  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||||||||    
T  43360065 tcatagtttgcaaaactcttgcattattaagaatgtatgttgctaac 43360019  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 45810203 - 45810257
Alignment:
Q  163 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 217  Q
    ||||||||||||| ||||||| ||||||| || |||||| | |||||||||||||    
T  45810203 attgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataa 45810257  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 45810090 - 45810135
Alignment:
Q  48 tactacttacatatatcttatatgttatcaataaactgaaagttgaca 95  Q
    ||||||||||||||  | ||||||||||||||||| ||||||||||||    
T  45810090 tactacttacatat--catatatgttatcaataaattgaaagttgaca 45810135  T

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