View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_58 (Length: 340)

Name: NF1246_low_58
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_58
NF1246_low_58
[»] chr7 (5 HSPs)
chr7 (121-231)||(14305188-14305298)
chr7 (119-253)||(48670133-48670264)
chr7 (142-231)||(23900413-23900502)
chr7 (169-231)||(47719596-47719658)
chr7 (172-231)||(47719003-47719062)
[»] chr1 (3 HSPs)
chr1 (124-231)||(47967960-47968067)
chr1 (124-231)||(24992068-24992175)
chr1 (169-231)||(37577538-37577600)
[»] chr2 (2 HSPs)
chr2 (124-231)||(29512993-29513100)
chr2 (172-231)||(36238624-36238683)
[»] chr4 (7 HSPs)
chr4 (172-231)||(55976265-55976324)
chr4 (169-231)||(37273249-37273311)
chr4 (171-231)||(45920402-45920462)
chr4 (171-231)||(55000786-55000846)
chr4 (124-231)||(24551794-24551901)
chr4 (172-231)||(55976850-55976909)
chr4 (124-225)||(2771317-2771418)
[»] chr3 (5 HSPs)
chr3 (169-231)||(17603853-17603915)
chr3 (155-231)||(11652392-11652468)
chr3 (172-231)||(45080402-45080461)
chr3 (172-231)||(46149728-46149787)
chr3 (172-221)||(17603277-17603326)
[»] chr5 (6 HSPs)
chr5 (160-231)||(2314045-2314110)
chr5 (172-231)||(1283394-1283453)
chr5 (169-231)||(1282027-1282089)
chr5 (171-231)||(9407348-9407408)
chr5 (171-231)||(16538880-16538940)
chr5 (187-231)||(19129464-19129508)
[»] chr8 (1 HSPs)
chr8 (172-231)||(28929944-28930003)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 14305298 - 14305188
Alignment:
Q  121 tagaatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14305298 tagaatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttaggaaaggagatatgaaatattgaatg 14305199  T
Q  221 cccacattaag 231  Q
    | |||||||||    
T  14305198 cgcacattaag 14305188  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 48670264 - 48670133
Alignment:
Q  119 agtagaatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaa 218  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||| ||    
T  48670264 agtagaatatgatgctggtagaggatgtatcattaggaagaagacaagtctcgtttagaaaaga---tgatttttagaaaaggagatatgaaatattgaa 48670168  T
Q  219 tgcccacattaaggcctttttcggtaggcgagaaa 253  Q
    || ||||||||||| |||||| |||||||||||||    
T  48670167 tgtccacattaaggtcttttttggtaggcgagaaa 48670133  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 23900502 - 23900413
Alignment:
Q  142 gatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| |  |||||||||||||| | ||||||||| |||| ||||||||| ||||||||||||||||||| |||  ||||||||||    
T  23900502 gatgtatcattgagaagaagacaagtcccatttaggaaacaagaggatttttagtaaaggagatatgaaatatttaatatccacattaag 23900413  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 47719596 - 47719658
Alignment:
Q  169 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  47719596 tcgtttaggaaataagaggatttttaggaaaggagatatgaaatactgaatgtccacattaag 47719658  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 47719062 - 47719003
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| | || ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  47719062 tttaggaaacaggaggatttttaggaaatgagatatggaatattaaatgcccacattaag 47719003  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 47968067 - 47967960
Alignment:
Q  124 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 223  Q
    ||||||||||||||| | ||||||| | |  |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  47968067 aatatggtgctggtacatgatgtataattgtgaagaagacaagtctcgtttaggaaacaagaagatttttaggaaaggagatatgaaatattaaatgccc 47967968  T
Q  224 acattaag 231  Q
    ||| ||||    
T  47967967 acaataag 47967960  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 24992175 - 24992068
Alignment:
Q  124 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 223  Q
    |||||| |||||||| ||||| ||||| |  |||||||||||||| | ||||||||| || | ||||||||  ||||||||||||||||| | |||| ||    
T  24992175 aatatgatgctggtacaggatatatcattgagaagaagacaagtcccatttaggaaacaaaaggatttttatgaaaggagatatgaaatacttaatgtcc 24992076  T
Q  224 acattaag 231  Q
    ||||||||    
T  24992075 acattaag 24992068  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 37577538 - 37577600
Alignment:
Q  169 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||| |||| ||| ||||| ||||||||||||||||| ||||||  |||||||||    
T  37577538 tcgtttaggaaacaagaggatctttaggaaaggagatatgaaatactaaatgttcacattaag 37577600  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 29512993 - 29513100
Alignment:
Q  124 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 223  Q
    |||||| |||||||||||||||||| | |  ||||||||||| ||| |||||||||  |||| ||| ||||| ||||||||||||||||| ||||||||     
T  29512993 aatatgatgctggtagaggatgtataattgtgaagaagacaaatctagtttaggaatcaagaggatctttaggaaaggagatatgaaatactaaatgcct 29513092  T
Q  224 acattaag 231  Q
    ||| ||||    
T  29513093 acaataag 29513100  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 36238624 - 36238683
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| | |||||| ||||||||    
T  36238624 tttaggaaataagaggatttttaggaaaggagatatgaaatacttaatgcctacattaag 36238683  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 55976324 - 55976265
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  55976324 tttagaaaacaagaggatttttaggaaaggagatatgaaatattaaatgcccacattaag 55976265  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 37273311 - 37273249
Alignment:
Q  169 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| |||||    
T  37273311 tcgtttaggaaacaagaggatttttaggaaaggagatatgaaatactaaatgcccacgttaag 37273249  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 45920462 - 45920402
Alignment:
Q  171 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||| |||| ||||||||| ||||||||||||||||| ||| |||||||||||||    
T  45920462 gtttaggaaacaagaggatttttaggaaaggagatatgaaatactaagtgcccacattaag 45920402  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 55000846 - 55000786
Alignment:
Q  171 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  55000846 gtttaggaaacaagatgatttttaggaaaggagatatgaaatactaagtgctcacattaag 55000786  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 24551901 - 24551794
Alignment:
Q  124 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 223  Q
    |||||| |||||||| | ||||||||| |  |||||||||||||| |  |||| ||| |||| ||||||||| ||||||||||||||||| | |||  ||    
T  24551901 aatatgatgctggtacaagatgtatcattgagaagaagacaagtcccaattagaaaacaagaggatttttaggaaaggagatatgaaatacttaatatcc 24551802  T
Q  224 acattaag 231  Q
    ||||||||    
T  24551801 acattaag 24551794  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 55976850 - 55976909
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  55976850 tttaggaaataagaggatttttaggaaaggagatatgaaatactgaatgtccacattaag 55976909  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 2771418 - 2771317
Alignment:
Q  124 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 223  Q
    ||||||||| ||||  | ||||||||| |  ||||||||  |||||||||||||||| ||||  | |||||| || | | |||||||||||| |||||||    
T  2771418 aatatggtgttggtgcaagatgtatcattgagaagaagatgagtctcgtttaggaaacaagagaaattttaggaatgtaaatatgaaatattgaatgccc 2771319  T
Q  224 ac 225  Q
    ||    
T  2771318 ac 2771317  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 17603853 - 17603915
Alignment:
Q  169 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  17603853 tcgtttaggaaataagaggatttttaggaaaggagatatgaaatactaaatgtccacattaag 17603915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 11652468 - 11652392
Alignment:
Q  155 gaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||||| | ||||||||| || | ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  11652468 gaagaagacaagtcccatttaggaaacaaaaggatttttaggaaaggagatatgaaatacttaatgtccacattaag 11652392  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 45080461 - 45080402
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  45080461 tttaggaaacaagaggatttttaggaaaggagatatgaaatattgaatgcctacattaag 45080402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 46149787 - 46149728
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  46149787 tttaggaaacaagaggatttttaggaaaggagatatgaaatattgaatgcctacattaag 46149728  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 17603326 - 17603277
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgc 221  Q
    ||||| ||| |||| ||||||||| |||||||||||||||||||||||||    
T  17603326 tttagaaaacaagaggatttttaggaaaggagatatgaaatattaaatgc 17603277  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 2314110 - 2314045
Alignment:
Q  160 agacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||||||||||||||||||||||||||  |||||      ||||||||||||||||||||||||    
T  2314110 agacaagtctcgtttaggaaagaagatgatttttacgaaagg------gaaatattaaatgcccacattaag 2314045  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 1283394 - 1283453
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  1283394 tttagaaaacaagaggatttttaggaaaggagatatgaaatattaaatgtccacattaag 1283453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 1282089 - 1282027
Alignment:
Q  169 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  1282089 tcgtttaggaaataagaggatttttaggaaaggagatatgaaatactgaatgtccacattaag 1282027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 9407408 - 9407348
Alignment:
Q  171 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    |||||||||| |||| ||||||||| ||||||||||||||||| ||| || ||||||||||    
T  9407408 gtttaggaaacaagaggatttttaggaaaggagatatgaaatactaagtgtccacattaag 9407348  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 16538880 - 16538940
Alignment:
Q  171 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||||  ||| ||||||||  ||||||||||||||||| ||||||||||| |||||    
T  16538880 gtttaggaaacgagaggatttttaataaaggagatatgaaatactaaatgcccacgttaag 16538940  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 19129464 - 19129508
Alignment:
Q  187 gatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||    
T  19129464 gatttttaggaaaggagatatgaaatactaagtgcccacattaag 19129508  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 28930003 - 28929944
Alignment:
Q  172 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 231  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  28930003 tttaggaaacaagaggatttttaggaaaggagatatgaaatattgaatgcctacattaag 28929944  T

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