View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_59 (Length: 339)
Name: NF1246_low_59
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 15562830 - 15563127
Alignment:
| Q |
13 |
aatatatatactatggcgttcaacactttcaataaaggcaaatattatatcacgaacatcaaatccacaacactaagacgttcttacgaacaaaaactaa |
112 |
Q |
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| T |
15562830 |
aatatatatactatggcgttcaacactttcaataaaggcaaatattatatcttgaacatcaaatccacaacactaagacgttcttaccaacgaaaactaa |
15562929 |
T |
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| Q |
113 |
aatattcccagtacttaaacatttttaaaaacttctcatacatatcattggtaattgaggtcaacgacgtccatcgtcggcaatatttaacatcttcatg |
212 |
Q |
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| T |
15562930 |
aacattcacagtacttaaacatttttaaaaacttctcatacatatcattggtaattgaggtcaacgacgtccatcgttagcaatatttaaaatcttcatg |
15563029 |
T |
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| Q |
213 |
attttgtgtctgatgaccaacacattcacatgggacaaaatcttcaccaaaacttgtagagggaggagattgagaatcaataacaatgtattcttctt |
310 |
Q |
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| T |
15563030 |
attttgtgtctgatgaccaacacattcacaggggacaaaatcttcaccaaaacttgcagagagaggagattgagaatcaataacaatgtattcttctt |
15563127 |
T |
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Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 46266118 - 46266417
Alignment:
| Q |
7 |
tccaagaatatatatactatggcgttcaacactttcaataaaggcaaatattatatcacgaacatcaaatccacaacactaagacgttcttacgaacaaa |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| || |
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| T |
46266118 |
tccaaaaatatatatactatggcgttcaacactttcaataaaggcgaatattatatcacgaacatcaaatccacaacaccaagactttcttactaacgaa |
46266217 |
T |
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| Q |
107 |
aactaaaatattcccagtacttaaacatttttaaaaacttctcatacatatcattggtaattgaggtcaacgacgtccatcgtcggcaatatttaacatc |
206 |
Q |
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|||||||| ||||| ||||||||||||||||||||| || ||| ||||| ||||||||||||||||||||| ||| |||||| |||||||||| ||| |
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| T |
46266218 |
aactaaaacattcctagtacttaaacatttttaaaacct--tcacacataacattggtaattgaggtcaacggtgtcgatcgtcaacaatatttaagatc |
46266315 |
T |
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| Q |
207 |
ttcatgattttgtgtctgatgaccaacacattcacatgggacaaaatcttcaccaaaacttgtagagggaggagattgagaatcaataacaatgtattct |
306 |
Q |
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|| |||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
46266316 |
tttatga--ttgtatctgatgaccaacacattcacatggcacacaatcttcaccaaaacttgtacagggaggagattgaaaatcaataacaatgtattct |
46266413 |
T |
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