View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_6 (Length: 620)
Name: NF1246_low_6
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 23916291 - 23915718
Alignment:
| Q |
17 |
tatatacataagcataattacatgtctgattgagctcaagtggttaataagctcaagttaaggacgaaacaatcattgaccaaactttacttacatattg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23916291 |
tatatacataagcataattacatgtctgattgagctcaaatggttaataagctctagttaaggacgaaacaattattgaccaaactttacttacatattg |
23916192 |
T |
|
| Q |
117 |
gctaatcttccgattactagggtcctttccctaggaaccgaaggattcagaccgaaaaaagaatagcatgcctcccatattgcatttactattaataata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23916191 |
gctaatcttccgattactagggtcctttccctaggaaccgaaggattcagaccgaaaaaagaatagcatgcctctcatattgcatttactattaataata |
23916092 |
T |
|
| Q |
217 |
taagaaaatgggacttccaaatgtgatactaat--atatcttatcatgacaaaaaacctctactcaaaatataaactcaagcagaaaaacacagaagttg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23916091 |
taagaaaatgggacttccaaatgtgatactaattcatattttatcatgacaaaaaacctctactcaaaatataaactcaagcagaaaaacacagaagttg |
23915992 |
T |
|
| Q |
315 |
catccctgagatgattaatgtgtaaaatgatgagattagtaacattaagcacaagtaaacaggtggtaattaacaaaagccatatatgacatcacaaaac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915991 |
catccctgagatgattaatgtgtaaaatgatgagattagtaacattaagcacaagtaaacaggtggtaattaacaaaagccatatatgacatcacaaaac |
23915892 |
T |
|
| Q |
415 |
ttatgcaaccaccgaattaaacaaaaatacaaaattgaagagaaacatacctacaagcaatgatnnnnnnnnnnnctttgctttcaagccaagattcatt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23915891 |
ttatgcaaccaccgaattaaacaaaaatacaaaattgaagagaagcatacctacaagcaatgataaaaaaaaaaactttgctttcaagccaagattcatt |
23915792 |
T |
|
| Q |
515 |
ttatcttaaaaaatacaaaataccccgaatagaaaacactgagaaaatgaagaatcagagaatttaccagatta |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23915791 |
ttatcttaaaaaatacaaaataccccgaatagaaaacactgagaaaatgaagaatcagagaatttaccaaatta |
23915718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 28835214 - 28835255
Alignment:
| Q |
43 |
tgattgagctcaagtggttaataagctcaagttaaggacgaa |
84 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
28835214 |
tgattgagatcaagtggttgatgagctcaagttaaggacgaa |
28835255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University