View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_61 (Length: 337)
Name: NF1246_low_61
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 12598454 - 12598208
Alignment:
| Q |
2 |
atgatgatgatactctctcacaaaaacaacctacaagattccaataacatcgtcccaaataatcagccaccgtatccattcctccttctcatacaaaaaa |
101 |
Q |
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| T |
12598454 |
atgatgatgatactctctcacaaaaacaacctacaagattccaataaaatcgtcccaaataatcagccactgtatccattactccttctcatacaaaaaa |
12598355 |
T |
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| Q |
102 |
caaacaagcagttcctcagcagaaatctaatagtttcattccattttagatagtaacacaggaattagaagcaggcaggcaacatggcttctaaaccttt |
201 |
Q |
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| T |
12598354 |
caa----gcagttcctcagcagaaatctaatagtttcatcccattttagatagtaacacaggaattagaagcaggcaggcaacatggcttctaaaccttt |
12598259 |
T |
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| Q |
202 |
gtgaatgacaaaaccaatcctcttaaacattacattcatagagacgaccta |
252 |
Q |
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| T |
12598258 |
gggaatgacaaaaccaatcctcttaaacattacattcataaagacgaccta |
12598208 |
T |
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