View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_63 (Length: 337)

Name: NF1246_low_63
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_63
NF1246_low_63
[»] chr5 (5 HSPs)
chr5 (31-291)||(29954298-29954559)
chr5 (41-235)||(22708208-22708405)
chr5 (86-125)||(17589550-17589589)
chr5 (192-238)||(12567190-12567236)
chr5 (86-135)||(32560638-32560687)
[»] chr4 (7 HSPs)
chr4 (41-287)||(7690326-7690573)
chr4 (41-235)||(1290425-1290624)
chr4 (41-285)||(51267553-51267793)
chr4 (210-278)||(7784990-7785057)
chr4 (81-127)||(7784902-7784948)
chr4 (86-168)||(21121837-21121918)
chr4 (86-132)||(51702234-51702280)
[»] chr2 (6 HSPs)
chr2 (41-291)||(31055628-31055878)
chr2 (41-285)||(25221828-25222076)
chr2 (53-286)||(16267295-16267528)
chr2 (86-167)||(35658371-35658453)
chr2 (86-126)||(19182355-19182395)
chr2 (86-134)||(38002210-38002258)
[»] chr6 (4 HSPs)
chr6 (49-285)||(1717367-1717604)
chr6 (88-134)||(6257522-6257568)
chr6 (81-133)||(31946476-31946528)
chr6 (81-139)||(3707189-3707247)
[»] chr3 (3 HSPs)
chr3 (110-239)||(6042908-6043040)
chr3 (151-236)||(35695367-35695453)
chr3 (197-241)||(41907343-41907387)
[»] chr1 (7 HSPs)
chr1 (86-240)||(26924824-26924978)
chr1 (192-242)||(31481277-31481327)
chr1 (86-125)||(30052438-30052477)
chr1 (187-244)||(18650145-18650201)
chr1 (86-139)||(23043648-23043701)
chr1 (86-126)||(18650264-18650304)
chr1 (196-232)||(30052330-30052366)
[»] scaffold0178 (1 HSPs)
scaffold0178 (85-134)||(9324-9373)
[»] chr7 (2 HSPs)
chr7 (86-139)||(27900038-27900091)
chr7 (189-229)||(22543197-22543237)
[»] chr8 (2 HSPs)
chr8 (86-126)||(10659016-10659056)
chr8 (81-133)||(41566476-41566527)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 31 - 291
Target Start/End: Original strand, 29954298 - 29954559
Alignment:
Q  31 tattaaaggacaatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954298 tattaaaggacaatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggatt 29954397  T
Q  131 gcgctcgtggtgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgtttgggttatttctgggtcaggtc 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29954398 gcgctcatggtgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgtttgggttatttctgggtcaggtg 29954497  T
Q  231 caatgtccccccagctctttacc-tttgttcttttatgttattttatttctatttttgctat 291  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29954498 caatgtccccccagctctttaccttttgttcttttatgttattttatttctatttttgctat 29954559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 22708208 - 22708405
Alignment:
Q  41 caatcttaaaaccctcttttattctactaaccctctctcatcatgtt--ttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgt 138  Q
    |||| ||||||||||||||||| ||| |    ||||||| |||||||  |||||||||||||||| || | |||||||||||||||||| ||||||||||    
T  22708208 caattttaaaaccctcttttatcctaatgttgctctctcgtcatgttatttttgtaacttggttttgatttcgtacgcgggttcgctgggttgcgctcgt 22708307  T
Q  139 ggtgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatg 235  Q
      ||| |||| | |||||||| |||||||| | | ||||| ||||| ||||||| |||||||||| |||| |||||||||||||||| ||| |||||||    
T  22708308 aatgaaagtttgttttgttagaattgattatgatcgtttc-tttttatgttttaccacgatgtatctccgattgggttatttctgggccagatccaatg 22708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 17589589 - 17589550
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgct 125  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  17589589 ttttttgtaacttggtttcgcacccgtacgcgggttcgct 17589550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 12567190 - 12567236
Alignment:
Q  192 cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcc 238  Q
    |||| ||||||||||||| ||||||| |||| |||||||||||||||    
T  12567190 cacgttgtatttccgtttcggttattcctggatcaggtccaatgtcc 12567236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 32560638 - 32560687
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgct 135  Q
    ||||||||||  ||||||||   |||||||||||||||||||||||||||    
T  32560638 ttttttgtaatctggtttcgcgcccgtacgcgggttcgctggattgcgct 32560687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 287
Target Start/End: Complemental strand, 7690573 - 7690326
Alignment:
Q  41 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgt-aacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 139  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  7690573 caatcttaaaaccctcttttattctaccgaccctctctcatcatcttttttgttaacttggtttcgaatccgtacgctggttcgttgggttgcgcccgtg 7690474  T
Q  140 gtgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccc 239  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  7690473 gtgagagttcgtttgttaggattgattagggtagtttcatttttctgttttacacgttgtatctccgtttgggttatttctgggtcaggtccaatgtccc 7690374  T
Q  240 cccagctctttacctttgttcttttatgttattttatttctatttttg 287  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7690373 cccagctctgtacctttgttcttttatgttattttatttctttttttg 7690326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 1290624 - 1290425
Alignment:
Q  41 caatcttaaaaccctcttttattctactaaccctctctcatcatg----ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctc 136  Q
    |||| ||||||||||||||||| ||| |    ||||||| |||||    ||||||||||||||||||||| ||||||||| |||||||||| |||| |||    
T  1290624 caattttaaaaccctcttttatcctaatgttgctctctcgtcatgttttttttttgtaacttggtttcgattccgtacgcaggttcgctgggttgctctc 1290525  T
Q  137 gtggtgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaat 234  Q
    ||| ||| |||| | ||||||||||||||||||  | ||||| ||||| ||||||| ||| |||||| |||| |||||||||||||||||||||||||||    
T  1290524 gtgatgaaagtttgttttgttaggattgattagaattgtttc-tttttatgttttaccacaatgtatctccgattgggttatttctgggtcaggtccaat 1290426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 285
Target Start/End: Original strand, 51267553 - 51267793
Alignment:
Q  41 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtgg 140  Q
    |||||| |||||||| |||||| ||| | || | ||||  |||| |||||||||||||||||||||   ||||| | | |||||||| |||||| ||||     
T  51267553 caatctaaaaacccttttttatcctattgacgccctcttgtcatcttttttgtaacttggtttcgag--cgtacacagtttcgctgggttgcgcccgtga 51267650  T
Q  141 tgagagttagtttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatg---- 235  Q
    ||| |||| |||||||||||||||||||||| |       ||||||||||| ||||||||||| ||  ||||||||||||||||||||||| ||||        
T  51267651 tgatagttcgtttgttaggattgattagggtcg-------tttctgttttatcacgatgtattcccaattgggttatttctgggtcaggtctaatgcccc 51267743  T
Q  236 tccccccagctctttacctttgttcttttatgttattttatttctatttt 285  Q
     ||||||| |||| ||||||| ||||||||||||||| ||||||| ||||    
T  51267744 cccccccaactctgtaccttttttcttttatgttattatatttctctttt 51267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 7784990 - 7785057
Alignment:
Q  210 gggttatttctgggtcaggtccaatgtccccccagctctttacctttgttcttttatgttattttattt 278  Q
    ||||||||||||||||||||| |||||||||||| | || ||||||| || |||||||||||| |||||    
T  7784990 gggttatttctgggtcaggtctaatgtccccccatcgctgtaccttt-ttattttatgttattctattt 7785057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 7784902 - 7784948
Alignment:
Q  81 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctgg 127  Q
    |||| |||||||||||||||||||||   ||||||||||||||||||    
T  7784902 tcatcttttttgtaacttggtttcgagctcgtacgcgggttcgctgg 7784948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 21121837 - 21121918
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagttagtttgttaggattgattag 168  Q
    |||||||||||||||| ||| | ||||| ||||||||||||| ||||||| ||| | ||  ||| ||||||||||| ||||||    
T  21121837 ttttttgtaacttggtctcgcacccgtatgcgggttcgctgggttgcgctagtgattag-tttattttgttaggatagattag 21121918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 51702234 - 51702280
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgc 132  Q
    |||||||||| | |||||||||||| |||| ||||||||||||||||    
T  51702234 ttttttgtaattcggtttcgaatccatacgtgggttcgctggattgc 51702280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 41 - 291
Target Start/End: Original strand, 31055628 - 31055878
Alignment:
Q  41 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtgg 140  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  31055628 caatcttaaaaccctcttttattctactggccctctttcatcatcttttttgtaacttggtttcgaatccgtacgctggttcgttgggttgcgctcgtgg 31055727  T
Q  141 tgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcccc 240  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||    
T  31055728 tgagagttcgtttgttaggattgattagggtagtttcatttttttgttttaaacgatgtatctccgtttgggttatttttgggtcaggtccaatgttccc 31055827  T
Q  241 ccagctctttacctttgttcttttatgttattttatttctatttttgctat 291  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  31055828 ccagctctgtacctttgttcttttatgttaatttatttctatttttgctat 31055878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 285
Target Start/End: Original strand, 25221828 - 25222076
Alignment:
Q  41 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtgg 140  Q
    |||||| |||||| | || ||| ||||| || ||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||   ||     
T  25221828 caatctaaaaaccattttgtatcctactgacgctctctcgtcgtcttttttgtaacttggtttcgaatccgtacgcgggttcgctgggttgcgcctatga 25221927  T
Q  141 tgagagttagttt-gttaggattgattagggtagtttcatttttctgtttta---cacgatgtatttccgtttgggttatttctgggtcaggtccaatgt 236  Q
    |||||||| |||| |||||||||||||||||| ||||| ||||| | | |||   ||||||||||  || ||||||||||||| |||||||||| |||||    
T  25221928 tgagagttcgttttgttaggattgattagggtcgtttcttttttttctattatatcacgatgtatccccatttgggttatttccgggtcaggtctaatgt 25222027  T
Q  237 ccccccagctctttacctttgttcttttatgttattttatttctatttt 285  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||| ||||    
T  25222028 cccccaagctctctacctcttttcttttatgttattttatttctctttt 25222076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 286
Target Start/End: Original strand, 16267295 - 16267528
Alignment:
Q  53 cctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagtt-agt 151  Q
    ||||||| || ||||| |||||| ||| |||| |||||||||||||  |||||   |||||||||| ||| ||||||||| | |||| |||||||| | |    
T  16267295 cctctttcatcctactgaccctcactcgtcatcttttttgtaacttaatttcgtgcccgtacgcggattcactggattgcacccgtgatgagagttcatt 16267394  T
Q  152 ttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccccccagctcttt 250  Q
    ||||||||||| |||||||| ||||| |||| |||||||| || |||||||   || ||| |||||||||| |||| ||||||||| ||| ||||||| |    
T  16267395 ttgttaggatttattagggtcgtttctttttactgttttatcatgatgtatcctcggttgagttatttctgtgtcaagtccaatgt-ccctcagctctgt 16267493  T
Q  251 acctttgttcttttatgttattttatttctattttt 286  Q
    |||||| ||||||||||||| ||||||||| |||||    
T  16267494 accttttttcttttatgtta-tttatttctcttttt 16267528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 35658371 - 35658453
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagttagtttg-ttaggattgatta 167  Q
    ||||||||||||||||||||  |||||||||||||||||| | ||||||| |||  ||| ||| ||||| |||||||||||||    
T  35658371 ttttttgtaacttggtttcgcgtccgtacgcgggttcgctaggttgcgcttgtgaggagtgttggtttgattaggattgatta 35658453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 19182355 - 19182395
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctg 126  Q
    |||||||||||||||||||| | ||||||||||||| ||||    
T  19182355 ttttttgtaacttggtttcgcacccgtacgcgggtttgctg 19182395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 38002210 - 38002258
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgc 134  Q
    ||||||||||||||||||||   ||||||||||||| ||||| ||||||    
T  38002210 ttttttgtaacttggtttcgcgcccgtacgcgggtttgctgggttgcgc 38002258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 49 - 285
Target Start/End: Complemental strand, 1717604 - 1717367
Alignment:
Q  49 aaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagtt 148  Q
    |||||| || |||| ||||| || |||| || |||| ||||||||||||||||||||| |||||||||||| ||||||| |||||   ||| ||||||||    
T  1717604 aaacccgctcttatcctactgacactctttcgtcatattttttgtaacttggtttcgagtccgtacgcgggatcgctgggttgcgtctgtgatgagagtt 1717505  T
Q  149 ag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccccccagct 246  Q
     | ||||||||||||| ||||||||||||| |||| | |||||| ||||||||||| || |||||||||||||||||||||| || ||| ||||| ||||    
T  1717504 cgttttgttaggattgtttagggtagtttctttttacggttttatcacgatgtattcccttttgggttatttctgggtcaggcccgatg-ccccctagct 1717406  T
Q  247 ctttacctttgttcttttatgttattttatttctatttt 285  Q
    || ||||||| ||||||||||||||||||||||| ||||    
T  1717405 ctgtaccttttttcttttatgttattttatttctctttt 1717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 6257522 - 6257568
Alignment:
Q  88 ttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgc 134  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||    
T  6257522 ttttgtaacttggtttcgcacccgtacgcgggttcgctgggttgcgc 6257568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 31946476 - 31946528
Alignment:
Q  81 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcg 133  Q
    |||| ||||||||||||||||||||   ||||||||||||||||||| |||||    
T  31946476 tcatattttttgtaacttggtttcgcgcccgtacgcgggttcgctgggttgcg 31946528  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 3707247 - 3707189
Alignment:
Q  81 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 139  Q
    |||| |||||||||||| ||||||| ||||||| | ||||| ||||| |||||||||||    
T  3707247 tcatcttttttgtaactcggtttcgcatccgtatgtgggtttgctgggttgcgctcgtg 3707189  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 6043040 - 6042908
Alignment:
Q  110 cgtacgcgggttcgctggattgcgctcgtg-gtgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccg 206  Q
    |||| |||||||||||||||||||| |||| ||||| ||| | ||||||||||||||||||||| | ||   |  ||| ||||| |||| ||||| ||||    
T  6043040 cgtatgcgggttcgctggattgcgcccgtgtgtgagtgtttgttttgttaggattgattagggttgattgcatggtctattttatcacgttgtatctccg 6042941  T
Q  207 tttgggttatttctgggtcaggtccaatgtccc 239  Q
    |||||||| | ||||||||||||| ||||||||    
T  6042940 tttgggttgtatctgggtcaggtctaatgtccc 6042908  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 35695367 - 35695453
Alignment:
Q  151 tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgt 236  Q
    ||||||||||||||||||||| |||||| |||  ||||||| |||||||||||  |  |||||||  || ||||||||||| |||||    
T  35695367 tttgttaggattgattagggttgtttcactttaatgttttatcacgatgtattctccattgggttgattttgggtcaggtctaatgt 35695453  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 41907343 - 41907387
Alignment:
Q  197 tgtatttccgtttgggttatttctgggtcaggtccaatgtccccc 241  Q
    ||||||| ||||||||||||| ||||||||||||  |||||||||    
T  41907343 tgtattttcgtttgggttattcctgggtcaggtctgatgtccccc 41907387  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 26924978 - 26924824
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagttagtttgttaggattgattagggtagtttcatttttct 185  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||||||| ||| | || |  | |||||||| || |||||| |||| | ||||   ||    
T  26924978 ttttttgtaatttggtttcgtgtccgtacgcgggtttgctggattgcgcttgtgattagtg-aattttgttagaatagattagagtagatccattggact 26924880  T
Q  186 gtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcccc 240  Q
    | |||| |||||||||||| | |||||||||||| || |||||||  |||||||||    
T  26924879 gatttatcacgatgtattttcatttgggttatttttgagtcaggtttaatgtcccc 26924824  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 31481327 - 31481277
Alignment:
Q  192 cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcccccc 242  Q
    |||||||||| ||||| ||||||||| |||||||||||| |||||||||||    
T  31481327 cacgatgtatctccgtctgggttattcctgggtcaggtctaatgtcccccc 31481277  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 30052477 - 30052438
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgct 125  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  30052477 ttttttgtaacttggtttcgcattcgtacgcgggttcgct 30052438  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 18650201 - 18650145
Alignment:
Q  187 ttttacacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccccccag 244  Q
    |||| ||||||||||||||||||| ||| || | ||||||||||| ||||||||||||    
T  18650201 tttttcacgatgtatttccgtttgagtt-ttcccgggtcaggtcctatgtccccccag 18650145  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 23043648 - 23043701
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 139  Q
    ||||||||||||| ||||||   ||||| ||||||||||||| |||||||||||    
T  23043648 ttttttgtaacttagtttcgtgcccgtatgcgggttcgctgggttgcgctcgtg 23043701  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 18650304 - 18650264
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctg 126  Q
    ||||||||||||||||||||   ||||||||||||||||||    
T  18650304 ttttttgtaacttggtttcgcgcccgtacgcgggttcgctg 18650264  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 30052366 - 30052330
Alignment:
Q  196 atgtatttccgtttgggttatttctgggtcaggtcca 232  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  30052366 atgtattcccgtttgggttattcctgggtcaggtcca 30052330  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 9373 - 9324
Alignment:
Q  85 gttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgc 134  Q
    ||||||||||||||||||||| | ||||||||||||||||| | ||||||    
T  9373 gttttttgtaacttggtttcgcacccgtacgcgggttcgctaggttgcgc 9324  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 27900091 - 27900038
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 139  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||||| ||||    
T  27900091 ttttttgtaacttggtttcgctcccgtacgcgggtttgctggattgcgcccgtg 27900038  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 22543197 - 22543237
Alignment:
Q  189 ttacacgatgtatttccgtttgggttatttctgggtcaggt 229  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  22543197 ttacacgatgtattctcgtttgggttattcctgggtcaggt 22543237  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 10659056 - 10659016
Alignment:
Q  86 ttttttgtaacttggtttcgaatccgtacgcgggttcgctg 126  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  10659056 ttttttgtaacctggtttcgaacccgtacgcgggttcgctg 10659016  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 41566476 - 41566527
Alignment:
Q  81 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcg 133  Q
    |||| ||||||||||||||||||||   |||||||||||||||||||||||||    
T  41566476 tcatattttttgtaacttggtttcgcg-ccgtacgcgggttcgctggattgcg 41566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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