View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_64 (Length: 336)

Name: NF1246_low_64
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_64
NF1246_low_64
[»] chr4 (13 HSPs)
chr4 (200-336)||(54277205-54277341)
chr4 (104-159)||(54277152-54277207)
chr4 (228-266)||(25309314-25309352)
chr4 (239-304)||(18628474-18628539)
chr4 (229-332)||(7367965-7368068)
chr4 (229-332)||(19304604-19304705)
chr4 (239-332)||(2996629-2996722)
chr4 (231-268)||(21953393-21953430)
chr4 (231-272)||(27043743-27043784)
chr4 (228-281)||(33641128-33641181)
chr4 (243-332)||(41097182-41097270)
chr4 (243-335)||(10365828-10365920)
chr4 (238-266)||(51808810-51808838)
[»] chr6 (6 HSPs)
chr6 (237-325)||(8420115-8420204)
chr6 (231-331)||(34939801-34939901)
chr6 (228-332)||(8010413-8010517)
chr6 (235-269)||(4308844-4308878)
chr6 (244-281)||(13908347-13908384)
chr6 (228-257)||(33498750-33498779)
[»] chr2 (9 HSPs)
chr2 (228-331)||(4350747-4350850)
chr2 (228-318)||(19243603-19243693)
chr2 (243-289)||(9478056-9478102)
chr2 (228-266)||(9478421-9478459)
chr2 (235-329)||(15120242-15120336)
chr2 (228-266)||(32821931-32821969)
chr2 (236-325)||(7862823-7862910)
chr2 (245-334)||(41905843-41905932)
chr2 (244-331)||(5902477-5902562)
[»] chr1 (8 HSPs)
chr1 (228-318)||(5157142-5157232)
chr1 (229-325)||(23373224-23373320)
chr1 (228-272)||(24460311-24460355)
chr1 (231-331)||(43420315-43420415)
chr1 (236-329)||(33723300-33723393)
chr1 (237-330)||(34536216-34536309)
chr1 (223-268)||(35350771-35350816)
chr1 (234-266)||(29415510-29415542)
[»] chr7 (7 HSPs)
chr7 (239-304)||(34754731-34754796)
chr7 (237-312)||(1418495-1418570)
chr7 (229-263)||(25796935-25796969)
chr7 (237-266)||(25833431-25833460)
chr7 (232-281)||(47046022-47046071)
chr7 (229-265)||(28340988-28341024)
chr7 (247-303)||(37064143-37064199)
[»] chr8 (8 HSPs)
chr8 (227-263)||(26215584-26215620)
chr8 (239-292)||(27465447-27465500)
chr8 (244-317)||(43208082-43208155)
chr8 (232-304)||(1664453-1664525)
chr8 (232-292)||(1889049-1889109)
chr8 (238-266)||(7616308-7616336)
chr8 (243-279)||(10559980-10560016)
chr8 (243-331)||(39881646-39881734)
[»] chr3 (5 HSPs)
chr3 (274-324)||(29113526-29113576)
chr3 (228-334)||(29771892-29771998)
chr3 (237-266)||(43046786-43046815)
chr3 (231-272)||(45432866-45432907)
chr3 (236-332)||(20192524-20192620)
[»] chr5 (8 HSPs)
chr5 (226-271)||(8173587-8173632)
chr5 (239-292)||(9927680-9927733)
chr5 (236-281)||(17369310-17369355)
chr5 (237-290)||(36796626-36796679)
chr5 (234-282)||(8089367-8089415)
chr5 (248-304)||(12407660-12407716)
chr5 (228-292)||(13244461-13244525)
chr5 (222-266)||(14257570-14257614)
[»] scaffold0199 (1 HSPs)
scaffold0199 (232-304)||(6894-6966)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 200 - 336
Target Start/End: Original strand, 54277205 - 54277341
Alignment:
Q  200 atgaattaggttgtctactagaattatgtttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgaga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  54277205 atgaattaggttgtctactagaattatgtttagggtctgtttagattgacttatttgaacttatctagtgacataaacacttatgagactgttagcgaga 54277304  T
Q  300 gcttacagaaacagcttatcacatgttcataagttat 336  Q
    |||||||||||||||||||||||||||||||||||||    
T  54277305 gcttacagaaacagcttatcacatgttcataagttat 54277341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 54277152 - 54277207
Alignment:
Q  104 cttattacacaaataaacagattaatttctcagtgttcccttattcatttcgtatg 159  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54277152 cttattacacaaataaacagattaatttcttagtgttcccttattcatttcgtatg 54277207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 25309352 - 25309314
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatcta 266  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25309352 tttagggtctgtttggattgacttatttgaacttatcta 25309314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 18628474 - 18628539
Alignment:
Q  239 tttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagctta 304  Q
    ||||||||||| ||||||| |||||||| ||||| ||||||||  ||||||||| | |||||||||    
T  18628474 tttagattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagctta 18628539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 7367965 - 7368068
Alignment:
Q  229 ttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttca 328  Q
    ||||||||||||| |||||||||||||||  |||||||  | || |||| |||  ||||||||| | ||||||| |   ||||||||||| ||||||| |    
T  7367965 ttagggtctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgttta 7368064  T
Q  329 taag 332  Q
    ||||    
T  7368065 taag 7368068  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 19304705 - 19304604
Alignment:
Q  229 ttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttca 328  Q
    |||||||||||||||||||||||||||||| ||||||| |  || |||||||   ||||| ||  | |||||||||| |||||||||||| |||| | ||    
T  19304705 ttagggtctgtttagattgacttatttgaa-ttatctacttgcataaacactagtgagacagtgtgggagagcttac-gaaacagcttatgacatttcca 19304608  T
Q  329 taag 332  Q
    ||||    
T  19304607 taag 19304604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 2996722 - 2996629
Alignment:
Q  239 tttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataag 332  Q
    ||||||||  ||||||||||||||| || ||||| || |||||  ||||||||| | |||||||||   ||||| ||||| |||||| ||||||    
T  2996722 tttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataag 2996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 21953430 - 21953393
Alignment:
Q  231 agggtctgtttagattgacttatttgaacttatctagt 268  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  21953430 agggtctgtttggattgacttatttgagcttatctagt 21953393  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 27043743 - 27043784
Alignment:
Q  231 agggtctgtttagattgacttatttgaacttatctagtgaca 272  Q
    ||||||||||| ||||||||||||||| |||||||| |||||    
T  27043743 agggtctgtttggattgacttatttgagcttatctactgaca 27043784  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 33641181 - 33641128
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacactt 281  Q
    |||||||||||||||||| ||||||||| || ||||||| || || ||||||||    
T  33641181 tttagggtctgtttagatcgacttatttcaatttatctactggcataaacactt 33641128  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 41097182 - 41097270
Alignment:
Q  243 gattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataag 332  Q
    |||||| ||||||||||||||||| || || || |||||  ||||||||| | ||||||||| ||||||| || || |||||| ||||||    
T  41097182 gattgagttatttgaacttatcta-tgtcaaaagcacttgtgagactgttcgggagagcttatagaaacaactaatgacatgtccataag 41097270  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 10365920 - 10365828
Alignment:
Q  243 gattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataagtta 335  Q
    ||||||||||||| | |||||||| ||||| |||||||  ||||||| || | || ||||||  ||||||  |||| |||||| |||||||||    
T  10365920 gattgacttatttaatcttatctactgacataaacactggagagactatttgagacagcttatcgaaacaaattataacatgtccataagtta 10365828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 51808810 - 51808838
Alignment:
Q  238 gtttagattgacttatttgaacttatcta 266  Q
    |||||||||||||||||||||||||||||    
T  51808810 gtttagattgacttatttgaacttatcta 51808838  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 8420115 - 8420204
Alignment:
Q  237 tgtttagattgactt-atttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgt 325  Q
    ||||| ||||||||| |||||| |||||||| ||||| ||||||||  ||||||||||| ||||||||| ||||| ||||||| ||||||    
T  8420115 tgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgt 8420204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 331
Target Start/End: Complemental strand, 34939901 - 34939801
Alignment:
Q  231 agggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcata 330  Q
    |||| |||||||| ||||| ||||| | |||||||||||||| ||||| ||  || ||||||   |||||||||| |||||||||||| |||||| ||||    
T  34939901 agggcctgtttaggttgacgtatttcagcttatctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccata 34939802  T
Q  331 a 331  Q
    |    
T  34939801 a 34939801  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 8010517 - 8010413
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttc 327  Q
    |||||||||||||| ||||||||||| ||| |||||||| || || ||||| ||  ||||| ||    ||||||||| ||||||| || || ||||||||    
T  8010517 tttagggtctgtttggattgacttatgtgagcttatctattggcataaacatttgtgagacagtccaggagagcttatagaaacaactcatgacatgttc 8010418  T
Q  328 ataag 332  Q
    |||||    
T  8010417 ataag 8010413  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 4308878 - 4308844
Alignment:
Q  235 tctgtttagattgacttatttgaacttatctagtg 269  Q
    |||||||| ||||||||||||||||||||||||||    
T  4308878 tctgtttaaattgacttatttgaacttatctagtg 4308844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 13908384 - 13908347
Alignment:
Q  244 attgacttatttgaacttatctagtgacacaaacactt 281  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  13908384 attgacttatttgaacttatctactgacataaacactt 13908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 33498779 - 33498750
Alignment:
Q  228 tttagggtctgtttagattgacttatttga 257  Q
    ||||||||||||||||||||||||||||||    
T  33498779 tttagggtctgtttagattgacttatttga 33498750  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 4350850 - 4350747
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttc 327  Q
    |||||||| ||||| ||||| ||||||||| ||| |||| ||||| || ||||||||||| |||| | |||| ||||   ||||||||||| ||||||||    
T  4350850 tttagggtttgtttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatgacatgttc 4350751  T
Q  328 ataa 331  Q
    ||||    
T  4350750 ataa 4350747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 19243693 - 19243603
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttat 318  Q
    ||||||| |||| | ||||||| |||||||||||||||| ||||| || || ||  ||||||||| | | ||||||| |||||||||||||    
T  19243693 tttagggcctgtatggattgacatatttgaacttatctactgacataagcatttctgagactgtttgggcgagcttatagaaacagcttat 19243603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 9478102 - 9478056
Alignment:
Q  243 gattgacttatttgaacttatctagtgacacaaacacttaagagact 289  Q
    |||||||||||||||||||||||| |  |||||||||||| ||||||    
T  9478102 gattgacttatttgaacttatctattagcacaaacacttatgagact 9478056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 9478459 - 9478421
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatcta 266  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  9478459 tttagagtctgttcagattgacttatttgaacttatcta 9478421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 15120336 - 15120242
Alignment:
Q  235 tctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcat 329  Q
    ||||||| |||||||||||||||||||||||| |  || ||||| ||  ||  ||||| | |||||||||  |||||| ||||| ||||||||||    
T  15120336 tctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcat 15120242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 32821969 - 32821931
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatcta 266  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  32821969 tttaggatctgtttagattgacttatttgagcttatcta 32821931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 7862910 - 7862823
Alignment:
Q  236 ctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgt 325  Q
    |||||| |||||||||||||||| ||||||| ||||  ||||||||  ||||||||| | ||||||||||  ||||| ||||| ||||||    
T  7862910 ctgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgt 7862823  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 41905843 - 41905932
Alignment:
Q  245 ttgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataagtt 334  Q
    ||||||||||||||||||| || |  || ||||||||| |||||| || | |||||||||   ||||| |||||  ||||||||||||||    
T  41905843 ttgacttatttgaacttatttatttgcataaacacttatgagactcttcgagagagcttatgaaaacaacttattgcatgttcataagtt 41905932  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 5902477 - 5902562
Alignment:
Q  244 attgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataa 331  Q
    |||||||||||||||||||||||  | || ||||||||  ||||||||| |  ||| ||||   ||||||||||| ||||||||||||    
T  5902477 attgacttatttgaacttatcta--ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataa 5902562  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 5157232 - 5157142
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttat 318  Q
    |||||| ||| ||| ||||||||||||||||||||||||  |||| ||||||||  || |||||| | ||||||||| ||||||| |||||    
T  5157232 tttaggatctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 23373224 - 23373320
Alignment:
Q  229 ttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgt 325  Q
    |||||| ||||||  |||||||||||||||||| |||| ||| | || |||||  |||| |||| | ||||||||| ||||||| ||||| ||||||    
T  23373224 ttagggcctgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgt 23373320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 24460311 - 24460355
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgaca 272  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||    
T  24460311 tttagggcctgtttggattgacttatttgaacttatctactgaca 24460355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 331
Target Start/End: Complemental strand, 43420415 - 43420315
Alignment:
Q  231 agggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcata 330  Q
    ||||||||||  ||||  ||||||||| ||||||||  |||| ||||||||  ||||||| | | |||| ||||  |||||||||||| |||||||||||    
T  43420415 agggtctgttaggattagcttatttgagcttatctacagacataaacacttgtgagactgcttgtgagatcttatggaaacagcttatgacatgttcata 43420316  T
Q  331 a 331  Q
    |    
T  43420315 a 43420315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 33723300 - 33723393
Alignment:
Q  236 ctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcat 329  Q
    |||||| |||||||||||||||||||||||| |  || ||||||||  ||||||| | | || | ||||  ||||||||| || ||||||||||    
T  33723300 ctgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcat 33723393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 34536309 - 34536216
Alignment:
Q  237 tgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcata 330  Q
    ||||| || |||||||||||||| |||||| ||||| ||||||||  ||||||||| | ||  |||||   ||||||||||| |||||| ||||    
T  34536309 tgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgtccata 34536216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 35350816 - 35350771
Alignment:
Q  223 ttatgtttagggtctgtttagattgacttatttgaacttatctagt 268  Q
    |||| ||| |||||||||| ||||||||||||||| ||||||||||    
T  35350816 ttatattttgggtctgtttggattgacttatttgaccttatctagt 35350771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 29415510 - 29415542
Alignment:
Q  234 gtctgtttagattgacttatttgaacttatcta 266  Q
    |||||||||||| ||||||||||||||||||||    
T  29415510 gtctgtttagatcgacttatttgaacttatcta 29415542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 34754731 - 34754796
Alignment:
Q  239 tttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagctta 304  Q
    ||||| ||||||| ||||| |||||||| ||||||||||||||| ||||||||| | |||||||||    
T  34754731 tttaggttgacttgtttgagcttatctattgacacaaacacttatgagactgtttgagagagctta 34754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 1418570 - 1418495
Alignment:
Q  237 tgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaaca 312  Q
    ||||| ||||||||||||||| |||||||| || || || |||||| ||| ||||| | ||||||||| |||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttatagaaaca 1418495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 25796935 - 25796969
Alignment:
Q  229 ttagggtctgtttagattgacttatttgaacttat 263  Q
    |||||||||||||||||| ||||||||||||||||    
T  25796935 ttagggtctgtttagatttacttatttgaacttat 25796969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Complemental strand, 25833460 - 25833431
Alignment:
Q  237 tgtttagattgacttatttgaacttatcta 266  Q
    ||||||||||||||||||||||||||||||    
T  25833460 tgtttagattgacttatttgaacttatcta 25833431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 47046022 - 47046071
Alignment:
Q  232 gggtctgtttagattgacttatttgaacttatctagtgacacaaacactt 281  Q
    |||||||||| ||||||||||||||  |||||||| ||||| ||||||||    
T  47046022 gggtctgtttggattgacttatttgtgcttatctactgacataaacactt 47046071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 28340988 - 28341024
Alignment:
Q  229 ttagggtctgtttagattgacttatttgaacttatct 265  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  28340988 ttagggtctgtttggattgacttatttgagcttatct 28341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 37064143 - 37064199
Alignment:
Q  247 gacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagctt 303  Q
    |||||||||||||||||||||||||| || |||||  ||||| ||| | ||||||||    
T  37064143 gacttatttgaacttatctagtgacataagcacttgtgagacggtttgtgagagctt 37064199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 26215620 - 26215584
Alignment:
Q  227 gtttagggtctgtttagattgacttatttgaacttat 263  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26215620 gtttagggtctgtttggattgacttatttgaacttat 26215584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 27465500 - 27465447
Alignment:
Q  239 tttagattgacttatttgaacttatctagtgacacaaacacttaagagactgtt 292  Q
    |||||||||||||||||||||||||||| || || || |||||  |||||||||    
T  27465500 tttagattgacttatttgaacttatctattggcataagcacttgcgagactgtt 27465447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 43208082 - 43208155
Alignment:
Q  244 attgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagctta 317  Q
    ||||||||||||||||||||||| ||||| | |||||   ||||||||| |  |||||||| | ||||||||||    
T  43208082 attgacttatttgaacttatctactgacatacacactactgagactgtttgaaagagcttataaaaacagctta 43208155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 1664525 - 1664453
Alignment:
Q  232 gggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagctta 304  Q
    |||||||||||||| |||||||||||  ||||||| |  || ||||||||  ||||||||| | |||||||||    
T  1664525 gggtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagctta 1664453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 1889049 - 1889109
Alignment:
Q  232 gggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgtt 292  Q
    |||||||||||||| |||||||||||  ||||||| || || ||||||||  |||||||||    
T  1889049 gggtctgtttagatggacttatttgagtttatctactggcataaacacttttgagactgtt 1889109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 7616308 - 7616336
Alignment:
Q  238 gtttagattgacttatttgaacttatcta 266  Q
    |||||||||||||||||||||||||||||    
T  7616308 gtttagattgacttatttgaacttatcta 7616336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 10559980 - 10560016
Alignment:
Q  243 gattgacttatttgaacttatctagtgacacaaacac 279  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  10559980 gattgacttatttgaacttatctattgacataaacac 10560016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 331
Target Start/End: Original strand, 39881646 - 39881734
Alignment:
Q  243 gattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataa 331  Q
    |||||||||||||||||||||||| || || ||||||||  |||| |||| |  |||||||    ||| ||||||| ||||||||||||    
T  39881646 gattgacttatttgaacttatctattggcataaacacttgtgagattgtttggaagagcttgtgaaaatagcttatgacatgttcataa 39881734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 29113576 - 29113526
Alignment:
Q  274 aaacacttaagagactgttagcgagagcttacagaaacagcttatcacatg 324  Q
    |||||||| |||||||||| | ||||||||||||||||| ||||| |||||    
T  29113576 aaacacttcagagactgtttgagagagcttacagaaacaacttataacatg 29113526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 29771998 - 29771892
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttc 327  Q
    ||||||||  ||||||||||| ||||||||||||||| | ||||| ||| |||   |||||| ||   ||||||||| ||||||| ||||  |||||| |    
T  29771998 tttagggttggtttagattgagttatttgaacttatcaactgacataaatactcgtgagactatttatgagagcttaaagaaacaacttaggacatgtcc 29771899  T
Q  328 ataagtt 334  Q
    |||||||    
T  29771898 ataagtt 29771892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Complemental strand, 43046815 - 43046786
Alignment:
Q  237 tgtttagattgacttatttgaacttatcta 266  Q
    ||||||||||||||||||||||||||||||    
T  43046815 tgtttagattgacttatttgaacttatcta 43046786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 45432866 - 45432907
Alignment:
Q  231 agggtctgtttagattgacttatttgaacttatctagtgaca 272  Q
    ||||||||||| ||||||||||||| |||||||||| |||||    
T  45432866 agggtctgtttggattgacttattttaacttatctactgaca 45432907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 20192524 - 20192620
Alignment:
Q  236 ctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagcttacagaaacagcttatcacatgttcataag 332  Q
    |||||| |||||||| |||| || ||||||| ||||| || |||||   | |||||  | ||||||||| ||||||||||||| |||||| ||||||    
T  20192524 ctgtttggattgactaatttcaatttatctattgacataagcacttcttacactgtatgagagagcttatagaaacagcttatgacatgtccataag 20192620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 8173632 - 8173587
Alignment:
Q  226 tgtttagggtctgtttagattgacttatttgaacttatctagtgac 271  Q
    |||||||||||||| | ||||||||||||| | |||||||||||||    
T  8173632 tgtttagggtctgtctggattgacttatttcagcttatctagtgac 8173587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 9927733 - 9927680
Alignment:
Q  239 tttagattgacttatttgaacttatctagtgacacaaacacttaagagactgtt 292  Q
    ||||||||||||||||||| |||||||  ||||| |||||||||  ||||||||    
T  9927733 tttagattgacttatttgatcttatcttttgacataaacacttacaagactgtt 9927680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 17369355 - 17369310
Alignment:
Q  236 ctgtttagattgacttatttgaacttatctagtgacacaaacactt 281  Q
    |||||| |||||||||||||||||||||||| ||||| || |||||    
T  17369355 ctgtttggattgacttatttgaacttatctactgacataatcactt 17369310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 36796626 - 36796679
Alignment:
Q  237 tgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactg 290  Q
    ||||| ||||||||||||||| |||||||| ||||| ||||||||  |||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataaacacttgtgagactg 36796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 8089415 - 8089367
Alignment:
Q  234 gtctgtttagattgacttatttgaacttatctagtgacacaaacactta 282  Q
    |||||||| ||||| |||||||||||||||||  ||||| |||||||||    
T  8089415 gtctgtttggattggcttatttgaacttatctcctgacataaacactta 8089367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 12407660 - 12407716
Alignment:
Q  248 acttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagctta 304  Q
    ||||||||||||||||||| ||||| ||||||||  ||||| ||| | |||||||||    
T  12407660 acttatttgaacttatctattgacataaacacttgtgagacggtttgagagagctta 12407716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 13244461 - 13244525
Alignment:
Q  228 tttagggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgtt 292  Q
    |||||||||||||||||||  |||||||||  ||||||| ||| | ||||||||| || ||||||    
T  13244461 tttagggtctgtttagatttgcttatttgagtttatctattgaaataaacacttatgacactgtt 13244525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 14257614 - 14257570
Alignment:
Q  222 attatgtttagggtctgtttagattgacttatttgaacttatcta 266  Q
    |||||||||| | | ||||| ||||||||||||||||||||||||    
T  14257614 attatgtttatgatatgtttggattgacttatttgaacttatcta 14257570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 6966 - 6894
Alignment:
Q  232 gggtctgtttagattgacttatttgaacttatctagtgacacaaacacttaagagactgttagcgagagctta 304  Q
    |||||||||||||| |||||||||||  ||||||| |  || ||||||||  ||||||||| | |||||||||    
T  6966 gggtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagctta 6894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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