View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_7 (Length: 605)
Name: NF1246_low_7
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 97 - 596
Target Start/End: Complemental strand, 44091729 - 44091251
Alignment:
| Q |
97 |
atcatccacattagtatttgctcaaaatatacacgacaagtaattagtgaggtacaacctagcagattgatgtaaaccctagaaagataaaattgaaaca |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44091729 |
atcatccacattagtatttgctcaaaatatacacgacaagtaattagtgaggtacaacctagcagattgatgtaacccctagaaagataaaattgaaaca |
44091630 |
T |
|
| Q |
197 |
agccatctttaattttcccagtatgttcctcgtcaactaatcatcttatataaacagtaccttatgtgcatatatataatacaagctttatgtatataac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44091629 |
agccatctttaattttcccagtatgttcctcgtcaactaatcatcttatataaacagtaccttatgtgcatatatataatacaagctttatgtatataac |
44091530 |
T |
|
| Q |
297 |
ttcaatctcacattgtaatgccttatggtataaggtagatcaggtagataccaagttgatagattcttccaatcagaagcaagtggaggagaaaatgaac |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44091529 |
ctcaatctcacattgtaatgccttatggtataaggtagatcagggagataccaagttgatagattcttccaatcagaagcaagtggaggagaaaatgaac |
44091430 |
T |
|
| Q |
397 |
aagttgaactgcggcagagatggtggcaagcgagttctgctgcctatgataggccgcatcaagcgtcgcatatattccattatagtggacgacgttgtta |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44091429 |
aagttgaactgcggcagagatggtggcaagcgagttctgctgcctatgataggccgcatcaagcgtcgcatatattccattatagtggacg--------- |
44091339 |
T |
|
| Q |
497 |
tgatcattgtccataaaatattatgttcatgcatttgtctttaactaagtagtcttctatgtatagttttgcaccatgtaagttgcatttggagaattat |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
44091338 |
------------ataaaatattatgttcatgcatttgtctttaactaagtagtcttctacgtatagttttgcaccatgtaagttgcatttggagcattat |
44091251 |
T |
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