View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_71 (Length: 325)
Name: NF1246_low_71
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 26454944 - 26454802
Alignment:
| Q |
10 |
gcaatgtaaggaaaaggttttcgggggtaataagtggagtttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatag |
109 |
Q |
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|||||||||||| |||| |||||| ||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454944 |
gcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatag |
26454845 |
T |
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| Q |
110 |
tattttcgcgaatcgctttatccaatgcttcaagttgaaagct |
152 |
Q |
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| T |
26454844 |
tattttcgcgaatcgctttatccaatgcttcaagttgatagct |
26454802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 26446766 - 26446629
Alignment:
| Q |
10 |
gcaatgtaaggaaaaggttttcgggggtaataagtggagtttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatag |
109 |
Q |
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|||||||||||| |||| |||||| ||| ||||| | || ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
26446766 |
gcaatgtaaggagaaggctttcggaggtgataagcgtagcttcaaagaagcatgatggctatcaaagtctttccacgaccaatctccaagtacactatag |
26446667 |
T |
|
| Q |
110 |
tattttcgcgaatcgctttatccaatgcttcaagttga |
147 |
Q |
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| T |
26446666 |
tattttcgcgaatcgctttatccaatgcttcaagttga |
26446629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 26454779 - 26454661
Alignment:
| Q |
178 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaggtttnnnnnnnctaaccttctagcaaatgaaagagtatcaggcctgatctgctcctg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454779 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaggtttaaaaaaactaaccttctagcaaatgaaagagtatcaggcctgatctgctcctg |
26454680 |
T |
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| Q |
278 |
ataacagtgatctatttcc |
296 |
Q |
| |
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|||||||| |||||||||| |
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| T |
26454679 |
ataacagtcatctatttcc |
26454661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 26448828 - 26448907
Alignment:
| Q |
54 |
aagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatagtattttcgcgaatcgctttatcca |
133 |
Q |
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| T |
26448828 |
aagaagcatgatggctatcaaagtctctccacaaccaggctccaagtacactatagtattttcacgaatcactttatcca |
26448907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 26446598 - 26446485
Alignment:
| Q |
181 |
atcaatccaagcaaacaacattacaatgaaaagggtttaggtttnnnnnnnctaaccttctagcaaatgaaagagtatcaggcctgatctgctcctgata |
280 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||| ||| | |||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
26446598 |
atcaatccaagcaaacaacattactatgaaaagggtt-aggtttaaataa-ctatctttctagcaaatggaagagtatcaggtgtgatctgctcttgata |
26446501 |
T |
|
| Q |
281 |
acagtgatctatttcc |
296 |
Q |
| |
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||||| |||||||||| |
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| T |
26446500 |
acagtcatctatttcc |
26446485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 26448947 - 26448993
Alignment:
| Q |
178 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaggttt |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26448947 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaagttt |
26448993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 29673839 - 29673703
Alignment:
| Q |
10 |
gcaatgtaaggaaaaggttttcgggggtaataagtggagtttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatag |
109 |
Q |
| |
|
|||||||||||| |||| |||||| ||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
29673839 |
gcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggctatcaaagtctttccacaaccagtctctaagtaaactatag |
29673740 |
T |
|
| Q |
110 |
tattttcgcgaatcgctttatccaatgcttcaagttg |
146 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||| |
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| T |
29673739 |
tattttcgcggattgctttatccaatgcttcaagttg |
29673703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 29673672 - 29673559
Alignment:
| Q |
178 |
ctcatcaatccaagcaaacaacattacaatgaaaagggtttaggtttnnnnnnnctaaccttctagcaaatgaaagagtatcaggcctgatctgctcctg |
277 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
29673672 |
ctcatcaatccaagcaaacaacattacattggaaagggtttaggtttaaaaaa-ctaaccttctagcaaatggaagagtatcaggcttgatctgctcctg |
29673574 |
T |
|
| Q |
278 |
ataacagtgatctat |
292 |
Q |
| |
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|||||||| |||||| |
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| T |
29673573 |
ataacagtcatctat |
29673559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 11495550 - 11495692
Alignment:
| Q |
10 |
gcaatgtaaggaaaaggttttcgggggtaataagtggagtttcgaagaagcatgatggctatcaaagtctttccacaaccagtctccaagtacactatag |
109 |
Q |
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|
|||||||||||| |||| |||||| ||| ||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
11495550 |
gcaatgtaaggagaaggctttcggaggtgataagcgtagcttcgaagaagcatgatggctatcaaagtctttccagaaccagtctccaagtacactatgg |
11495649 |
T |
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| Q |
110 |
tattttcgcgaatcgctttatccaatgcttcaagttgaaagct |
152 |
Q |
| |
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||||||| || |||||||| |||||||||||||| ||| |||| |
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| T |
11495650 |
tattttcacggatcgctttttccaatgcttcaagctgatagct |
11495692 |
T |
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