View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_72 (Length: 324)
Name: NF1246_low_72
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 66 - 295
Target Start/End: Complemental strand, 35354525 - 35354292
Alignment:
| Q |
66 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaagggnnnnnnnnnnnnnnn- |
164 |
Q |
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| T |
35354525 |
aatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaaaaaa |
35354426 |
T |
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| Q |
165 |
---ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354425 |
aaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
35354326 |
T |
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| Q |
262 |
agaaatccaaatctggttgtgtagcattctgatc |
295 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35354325 |
agaaatccaaatctggttgtgtagcattctgatc |
35354292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 35369456 - 35369328
Alignment:
| Q |
165 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
264 |
Q |
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|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
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| Q |
265 |
aatccaaatctggttgtgtagcattctga |
293 |
Q |
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| T |
35369356 |
aatccaaatctgattgtgtagcattctga |
35369328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 35378323 - 35378212
Alignment:
| Q |
182 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
281 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
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| Q |
282 |
gtagcattctga |
293 |
Q |
| |
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|||||||||||| |
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| T |
35378223 |
gtagcattctga |
35378212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 19683783 - 19683663
Alignment:
| Q |
173 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
272 |
Q |
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||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
273 |
tctggttgtgtagcattctga |
293 |
Q |
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|||| || ||||||||||||| |
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| T |
19683683 |
tctgattatgtagcattctga |
19683663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 19632560 - 19632678
Alignment:
| Q |
173 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
272 |
Q |
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||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
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| Q |
273 |
tctggttgtgtagcattct |
291 |
Q |
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||||| ||||||||||||| |
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| T |
19632660 |
tctggctgtgtagcattct |
19632678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 19684091 - 19684048
Alignment:
| Q |
66 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
109 |
Q |
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|||||||||||||||||||||||| |||||| | |||||||||| |
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| T |
19684091 |
aatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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