View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_76 (Length: 322)

Name: NF1246_low_76
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_76
NF1246_low_76
[»] chr2 (5 HSPs)
chr2 (92-269)||(13447972-13448149)
chr2 (159-262)||(13454468-13454571)
chr2 (92-159)||(13439919-13439986)
chr2 (159-267)||(13439829-13439937)
chr2 (92-150)||(13454562-13454620)
[»] chr8 (1 HSPs)
chr8 (94-159)||(12641876-12641941)
[»] chr5 (2 HSPs)
chr5 (94-158)||(28385054-28385118)
chr5 (159-256)||(28384975-28385071)
[»] chr4 (2 HSPs)
chr4 (92-158)||(48961011-48961077)
chr4 (92-158)||(48967178-48967244)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 92 - 269
Target Start/End: Complemental strand, 13448149 - 13447972
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgat 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448149 tcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgat 13448050  T
Q  192 taattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448049 taattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatg 13447972  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 13454571 - 13454468
Alignment:
Q  159 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg 258  Q
    ||||||||||||||| ||||||||| | |||||||||||||| ||| ||||| ||| |||||||||||||| |||||||||| || |||||||||||| |    
T  13454571 cttaaaagattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtcaagcag 13454472  T
Q  259 aagt 262  Q
    ||||    
T  13454471 aagt 13454468  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 13439986 - 13439919
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc 159  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  13439986 tcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagacc 13439919  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 13439937 - 13439829
Alignment:
Q  159 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg 258  Q
    ||||||||||||||||||| |||||   |||||||||||||| || |||||||||  |||||||||| | ||||||||| || || | |||||||||| |    
T  13439937 cttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacctatcctaataatattgttggttcgtcaagcag 13439838  T
Q  259 aagtgtgaa 267  Q
    |||||||||    
T  13439837 aagtgtgaa 13439829  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 13454620 - 13454562
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagat 150  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13454620 tcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagat 13454562  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 12641876 - 12641941
Alignment:
Q  94 aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc 159  Q
    ||||||| || |||||| |||| |||||||||||||||||| |||| |||||||||||||||||||    
T  12641876 aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagacc 12641941  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 28385118 - 28385054
Alignment:
Q  94 aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 158  Q
    ||||||| || || ||||||||||||||||| ||||| || |||||||||||||||| |||||||    
T  28385118 aagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagac 28385054  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 28385071 - 28384975
Alignment:
Q  159 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagc 256  Q
    ||||||||||||||||||  ||| |   ||||||||| ||||||| ||| || | | |||||| ||||| |||||||||| |||| ||||||||||||    
T  28385071 cttaaaagattgagagacagcaaaccacatgattaat-caaatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtcaagc 28384975  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 48961077 - 48961011
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 158  Q
    ||||| ||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| |||||||    
T  48961077 tcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagac 48961011  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 48967244 - 48967178
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 158  Q
    ||||||||| |||| |||||||||||||||  | ||||||||||| || |||||||||  |||||||    
T  48967244 tcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagac 48967178  T

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