View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_77 (Length: 320)
Name: NF1246_low_77
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 30168449 - 30168411
Alignment:
| Q |
6 |
agagagaagaaaaagacacgtaggacttccaaaattggg |
44 |
Q |
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| T |
30168449 |
agagagaagaaaaagacacgtaggacttccaaaattggg |
30168411 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 43245428 - 43245384
Alignment:
| Q |
73 |
tgcatttcttgcttgtttcatttgtaaatttcagcatttcccttt |
117 |
Q |
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||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
43245428 |
tgcatttcttgcttgttacattcgtaaatttcagcattttccttt |
43245384 |
T |
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