View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_78 (Length: 320)

Name: NF1246_low_78
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_78
NF1246_low_78
[»] chr3 (11 HSPs)
chr3 (218-320)||(34750105-34750207)
chr3 (77-162)||(34750264-34750349)
chr3 (77-122)||(18834-18879)
chr3 (77-122)||(18975-19020)
chr3 (77-132)||(34060803-34060858)
chr3 (77-134)||(8847487-8847544)
chr3 (77-133)||(51817348-51817404)
chr3 (78-123)||(49976187-49976232)
chr3 (77-133)||(8715537-8715593)
chr3 (77-133)||(9067424-9067480)
chr3 (77-133)||(37509128-37509184)
[»] chr7 (8 HSPs)
chr7 (77-121)||(43189685-43189729)
chr7 (77-131)||(29687493-29687547)
chr7 (77-134)||(3681711-3681768)
chr7 (75-122)||(6548545-6548592)
chr7 (77-132)||(42222238-42222293)
chr7 (84-133)||(36279143-36279192)
chr7 (77-134)||(40763266-40763323)
chr7 (81-133)||(32204203-32204255)
[»] chr2 (6 HSPs)
chr2 (77-133)||(34220682-34220738)
chr2 (77-121)||(11659279-11659323)
chr2 (78-118)||(32949525-32949565)
chr2 (95-131)||(2958507-2958543)
chr2 (77-121)||(13997952-13997996)
chr2 (81-133)||(43972016-43972068)
[»] chr5 (8 HSPs)
chr5 (77-132)||(37243864-37243919)
chr5 (77-133)||(4422000-4422056)
chr5 (84-132)||(27823283-27823331)
chr5 (80-122)||(17168696-17168738)
chr5 (77-122)||(20184595-20184640)
chr5 (77-133)||(3241989-3242045)
chr5 (77-133)||(12914192-12914248)
chr5 (77-133)||(35653291-35653347)
[»] chr4 (13 HSPs)
chr4 (78-133)||(3769831-3769886)
chr4 (85-132)||(35511217-35511264)
chr4 (77-133)||(23765595-23765651)
chr4 (77-133)||(34016642-34016698)
chr4 (77-121)||(35675238-35675282)
chr4 (77-133)||(51018415-51018471)
chr4 (77-132)||(33951717-33951772)
chr4 (78-123)||(10567325-10567370)
chr4 (77-118)||(27544523-27544564)
chr4 (77-133)||(19328964-19329020)
chr4 (78-134)||(20811281-20811337)
chr4 (77-133)||(35927310-35927366)
chr4 (78-122)||(39158373-39158417)
[»] chr8 (5 HSPs)
chr8 (78-132)||(39972189-39972243)
chr8 (78-127)||(17319996-17320045)
chr8 (77-133)||(25249377-25249433)
chr8 (78-132)||(8018779-8018833)
chr8 (77-134)||(26195408-26195465)
[»] chr1 (5 HSPs)
chr1 (80-133)||(41492929-41492982)
chr1 (77-132)||(40845268-40845323)
chr1 (77-132)||(41898893-41898948)
chr1 (78-128)||(8414855-8414905)
chr1 (77-123)||(43433792-43433838)
[»] chr6 (2 HSPs)
chr6 (77-132)||(28014652-28014707)
chr6 (77-133)||(7875217-7875273)
[»] scaffold0101 (1 HSPs)
scaffold0101 (78-127)||(11089-11138)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 34750207 - 34750105
Alignment:
Q  218 ctatcacttgtatcaatacaagcaaatttcgacaaacttcttactggtgaattttaatgtgcatgacaataaaaaagaatttgatgatatgtgtacccgt 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34750207 ctatcacctgtatcaatacaagcaaatttcgacaaacttcttactagtgacttttaatgtgcatgacaataaaaaagaatttgatgatatgtgtacccgt 34750108  T
Q  318 gca 320  Q
    |||    
T  34750107 gca 34750105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 34750349 - 34750264
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatgtcttaagacactatttagcatttccgaag 162  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34750349 caacaatattttaatttataaaaagttaaattcatcacttttcaccagtttccaatgtcttaagacactatttagcatttccgaag 34750264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 18879 - 18834
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcacc 122  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  18879 caacaatattttaatttttaaaaagttaaattcatcacttttcacc 18834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 19020 - 18975
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcacc 122  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  19020 caacaatattttaatttttaaaaagttaaattcatcacttttcacc 18975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 34060858 - 34060803
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||||||||||| || |||||||| |||||||||||||||||||| ||| ||||    
T  34060858 caacaatattttaacttttaaaaagttaaattcatcacttttcaccatttttcaat 34060803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 8847544 - 8847487
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatgt 134  Q
    |||||||||||||| || |||||||| ||||| ||||||||| |||| ||||||||||    
T  8847544 caacaatattttaacttttaaaaagttaaattaatcactttttaccattttccaatgt 8847487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 51817404 - 51817348
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||| | || |||||||| ||||| |||||||||||||| |||||||||    
T  51817404 caacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatg 51817348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 49976232 - 49976187
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcacca 123  Q
    ||||||||||| | || |||||||| ||||||||||||||||||||    
T  49976232 aacaatattttgacttttaaaaagttaaattcatcacttttcacca 49976187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 8715593 - 8715537
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||| ||||| | || |||||||| ||||| |||||||||||||| |||||||||    
T  8715593 caacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatg 8715537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 9067480 - 9067424
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||| ||||| | || |||||||| ||||| |||||||||||||| |||||||||    
T  9067480 caacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatg 9067424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 37509128 - 37509184
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||| | || |||||||| ||||| |||||||||||| | |||||||||    
T  37509128 caacaatattttgacttttaaaaagttaaatttatcacttttcactattttccaatg 37509184  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 43189729 - 43189685
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcac 121  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  43189729 caacaatattttaacttttaaaaagtcaaattcatcacttttcac 43189685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 29687493 - 29687547
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaa 131  Q
    |||||| ||||||| || |||||||| |||||||||||||||||||| |||||||    
T  29687493 caacaacattttaacttttaaaaagttaaattcatcacttttcaccattttccaa 29687547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 3681711 - 3681768
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatgt 134  Q
    |||||| ||||||| || |||||||| ||||| |||||||||||||| ||||||||||    
T  3681711 caacaacattttaacttttaaaaagttaaatttatcacttttcaccattttccaatgt 3681768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 6548545 - 6548592
Alignment:
Q  75 tccaacaatattttaatttataaaaagtcaaattcatcacttttcacc 122  Q
    |||||||||||||||| || |||||||| |||||||||| ||||||||    
T  6548545 tccaacaatattttaacttttaaaaagttaaattcatcatttttcacc 6548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 42222238 - 42222293
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||||||||| | || |||||||| ||||| |||||||||||||| ||||||||    
T  42222238 caacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaat 42222293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 36279143 - 36279192
Alignment:
Q  84 attttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    ||||| |||| |||||||| ||||| |||||||||||||| |||||||||    
T  36279143 attttgatttttaaaaagttaaatttatcacttttcaccattttccaatg 36279192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 40763266 - 40763323
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatgt 134  Q
    |||||| ||||||| || |||||||| ||||| |||||||||||||| ||| ||||||    
T  40763266 caacaacattttaacttttaaaaagttaaatttatcacttttcaccatttttcaatgt 40763323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 32204203 - 32204255
Alignment:
Q  81 aatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||| || |||||||| ||||||||||||||||| || ||| |||||    
T  32204203 aatattttaacttttaaaaagttaaattcatcacttttcatcatttttcaatg 32204255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 34220738 - 34220682
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||||| || |||||| | ||||||||||||||||||||||| ||||||    
T  34220738 caacaatattttaacttttaaaaacttaaattcatcacttttcaccacttcccaatg 34220682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 11659279 - 11659323
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcac 121  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||    
T  11659279 caacaatattttaatttttaaaaagttaaattcttcacttttcac 11659323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 32949525 - 32949565
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcactttt 118  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  32949525 aacaatattttaatttttaaaaagtcaaattcatcattttt 32949565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 2958543 - 2958507
Alignment:
Q  95 taaaaagtcaaattcatcacttttcaccactttccaa 131  Q
    |||||||| |||||||| |||||||||||||||||||    
T  2958543 taaaaagttaaattcataacttttcaccactttccaa 2958507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 13997996 - 13997952
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcac 121  Q
    ||||||||||||||||| |||||||| ||||| |||| |||||||    
T  13997996 caacaatattttaatttttaaaaagttaaatttatcatttttcac 13997952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 43972016 - 43972068
Alignment:
Q  81 aatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||| ||  ||||||||||||||||| |||||||||  |||||||||    
T  43972016 aatattttaactttaaaaaagtcaaattcatctcttttcacctttttccaatg 43972068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 37243864 - 37243919
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  37243864 caacaacattttaatttttaaaaagttaaatttatcacttttcaccattttccaat 37243919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 4422056 - 4422000
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||| ||||| |||| |||||||| ||||| |||||||||||||| |||||||||    
T  4422056 caacaacattttgatttgtaaaaagttaaatttatcacttttcaccattttccaatg 4422000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 27823283 - 27823331
Alignment:
Q  84 attttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  27823283 attttaatttttaaaaagttaaatttatcacttttcaccattttccaat 27823331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 17168696 - 17168738
Alignment:
Q  80 caatattttaatttataaaaagtcaaattcatcacttttcacc 122  Q
    ||||||||||| || ||||||||||||||||||| ||||||||    
T  17168696 caatattttaaattttaaaaagtcaaattcatcatttttcacc 17168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 20184640 - 20184595
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcacc 122  Q
    ||||||| |||||| || |||||||| |||||||||||||||||||    
T  20184640 caacaatgttttaacttttaaaaagtgaaattcatcacttttcacc 20184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 3242045 - 3241989
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||||| || ||||||||  ||||||||| ||||||| |||| ||||||    
T  3242045 caacaatattttaacttttaaaaagtttaattcatcaattttcactacttcccaatg 3241989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 12914192 - 12914248
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||| |||| |||||| | ||||| |||||||||||||| ||| |||||    
T  12914192 caacaatattttgatttttaaaaaattaaatttatcacttttcaccatttttcaatg 12914248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 35653347 - 35653291
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||| ||||| ||||  ||||||| ||||| |||||||||||||| |||||||||    
T  35653347 caacaacattttgattttcaaaaagttaaatttatcacttttcaccattttccaatg 35653291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 3769831 - 3769886
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| ||| |||||    
T  3769831 aacaatattttaacttttaaaaagtcaaatttatcacttttcaccatttttcaatg 3769886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 35511264 - 35511217
Alignment:
Q  85 ttttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||||    
T  35511264 ttttaacttttaaaaagtcaaattcatcacttttcaccattttccaat 35511217  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 23765595 - 23765651
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||| ||||| |||| |||||||| ||||| |||||||||||||| |||||||||    
T  23765595 caacaacattttgatttttaaaaagttaaatttatcacttttcaccattttccaatg 23765651  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 34016642 - 34016698
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||| ||||| | || |||||||| |||||||||||||||||||| |||||||||    
T  34016642 caacaacattttgacttttaaaaagttaaattcatcacttttcaccattttccaatg 34016698  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 35675282 - 35675238
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcac 121  Q
    |||||||||||||| || |||||||| ||||||||||||||||||    
T  35675282 caacaatattttaacttttaaaaagttaaattcatcacttttcac 35675238  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 51018471 - 51018415
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    ||||||| ||||||||| |||||||| |||||| ||||||||||||| ||| |||||    
T  51018471 caacaatgttttaatttttaaaaagttaaattcttcacttttcaccatttttcaatg 51018415  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 33951717 - 33951772
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||| | ||||||||    
T  33951717 caacaacattttaatttttaaaaagttaaatttatcacttttcacaattttccaat 33951772  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 10567370 - 10567325
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcacca 123  Q
    |||||| ||||||||| ||||||||||||| ||||||||| |||||    
T  10567370 aacaattttttaatttttaaaaagtcaaatccatcactttccacca 10567325  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 27544523 - 27544564
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcactttt 118  Q
    |||||||||||||| || |||||| |||||||||||||||||    
T  27544523 caacaatattttaacttttaaaaattcaaattcatcactttt 27544564  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 19329020 - 19328964
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||| | || |||||||| ||||| ||||| |||||||| |||||||||    
T  19329020 caacaatattttgacttttaaaaagttaaatttatcacatttcaccattttccaatg 19328964  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 20811281 - 20811337
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatgt 134  Q
    ||||| ||||| | || |||||||| ||||| |||||||||||||| ||||||||||    
T  20811281 aacaacattttgacttttaaaaagttaaatttatcacttttcaccaatttccaatgt 20811337  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 35927366 - 35927310
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||||| || |||||||| |||||||||  ||||||||| |||| ||||    
T  35927366 caacaatattttaacttttaaaaagttaaattcatcgtttttcaccattttctaatg 35927310  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 39158417 - 39158373
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcacc 122  Q
    |||||||||||||||| |||||||| ||||  |||||||||||||    
T  39158417 aacaatattttaatttttaaaaagttaaatagatcacttttcacc 39158373  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 39972243 - 39972189
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||| |||||| || ||||||||||||||||||||||||||||| || |||||    
T  39972243 aacaattttttaacttttaaaaagtcaaattcatcacttttcaccatttcccaat 39972189  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 17320045 - 17319996
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccacttt 127  Q
    ||||||||||||| || |||||||| ||||||||| ||||||||||||||    
T  17320045 aacaatattttaacttttaaaaagttaaattcatctcttttcaccacttt 17319996  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 25249433 - 25249377
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||| | || |||||||| ||||| |||||||||||||| |||||||||    
T  25249433 caacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatg 25249377  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 8018779 - 8018833
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    ||||| ||||| |||| |||||||| ||||| |||||||||||||| ||||||||    
T  8018779 aacaacattttgatttttaaaaagttaaatttatcacttttcaccattttccaat 8018833  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 26195465 - 26195408
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatgt 134  Q
    |||||| ||||||| || |||||||| ||||| |||||||||||| | ||||||||||    
T  26195465 caacaacattttaacttttaaaaagttaaatttatcacttttcacaattttccaatgt 26195408  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 41492929 - 41492982
Alignment:
Q  80 caatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||| ||||||    
T  41492929 caatattttaacttttaaaatgtaaaattcatcacttttcaccacttcccaatg 41492982  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 40845268 - 40845323
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||||||||| |||| |||||||| ||||| |||||||||||||| ||| ||||    
T  40845268 caacaatattttgatttttaaaaagttaaatttatcacttttcaccatttttcaat 40845323  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 41898948 - 41898893
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||||||||||| || |||||||| ||||||||||||||| |||| ||| ||||    
T  41898948 caacaatattttaacttttaaaaagttaaattcatcactttttaccatttttcaat 41898893  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 8414905 - 8414855
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccactttc 128  Q
    ||||||||||||| || |||||| ||||||||||||| |||||||| ||||    
T  8414905 aacaatattttaacttttaaaaaatcaaattcatcacatttcaccattttc 8414855  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 43433792 - 43433838
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcacca 123  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||||    
T  43433792 caacaacattttaatttttaaaaagttaaatttatcacttttcacca 43433838  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 28014652 - 28014707
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaat 132  Q
    |||||||||||||| || |||||||||||| |||||| ||||||||| || |||||    
T  28014652 caacaatattttaacttttaaaaagtcaaactcatcatttttcaccatttcccaat 28014707  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 7875273 - 7875217
Alignment:
Q  77 caacaatattttaatttataaaaagtcaaattcatcacttttcaccactttccaatg 133  Q
    |||||||||||| | || |||||||| ||||| ||||||||||| || |||||||||    
T  7875273 caacaatattttgacttttaaaaagttaaatttatcacttttcatcattttccaatg 7875217  T

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Target: scaffold0101 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 11138 - 11089
Alignment:
Q  78 aacaatattttaatttataaaaagtcaaattcatcacttttcaccacttt 127  Q
    ||||||||||||| || |||||||| |||||||||  |||||||||||||    
T  11138 aacaatattttaacttttaaaaagttaaattcatcttttttcaccacttt 11089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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