View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_79 (Length: 318)

Name: NF1246_low_79
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_79
NF1246_low_79
[»] chr7 (3 HSPs)
chr7 (129-294)||(37850596-37850769)
chr7 (76-117)||(37850522-37850563)
chr7 (223-290)||(16904472-16904539)
[»] chr3 (4 HSPs)
chr3 (225-294)||(38512107-38512176)
chr3 (224-290)||(19609385-19609451)
chr3 (232-290)||(19611994-19612052)
chr3 (224-290)||(40462398-40462464)
[»] chr5 (1 HSPs)
chr5 (224-290)||(7827887-7827953)
[»] chr6 (5 HSPs)
chr6 (239-294)||(7072242-7072297)
chr6 (227-294)||(17835466-17835532)
chr6 (220-290)||(1063561-1063631)
chr6 (229-279)||(8114979-8115029)
chr6 (224-290)||(31894172-31894238)
[»] chr2 (4 HSPs)
chr2 (212-290)||(17695416-17695494)
chr2 (223-279)||(28186310-28186366)
chr2 (224-291)||(34120400-34120467)
chr2 (206-290)||(39691576-39691660)
[»] chr8 (3 HSPs)
chr8 (217-290)||(7703113-7703186)
chr8 (225-294)||(4428317-4428385)
chr8 (225-290)||(8721659-8721724)
[»] chr4 (6 HSPs)
chr4 (221-266)||(27880208-27880253)
chr4 (224-290)||(26885520-26885584)
chr4 (228-279)||(49175907-49175958)
chr4 (224-278)||(25141883-25141937)
chr4 (217-290)||(3669965-3670038)
chr4 (222-290)||(51625169-51625237)
[»] chr1 (3 HSPs)
chr1 (225-290)||(32970534-32970599)
chr1 (224-294)||(37177927-37177996)
chr1 (217-294)||(41080680-41080757)
[»] scaffold0330 (1 HSPs)
scaffold0330 (225-278)||(5488-5541)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 129 - 294
Target Start/End: Original strand, 37850596 - 37850769
Alignment:
Q  129 tttccagcatgtgaaaatttatatgagttggatctcatcaattcatcacagtccaacatgt--------taagagacatctgacaaaaatatttattcca 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||| ||||||||    
T  37850596 tttccagcatgtgaaaatttatatgagttggatctcatgaattcatcacagtccaacatgtcttaatgttaagagacatctgacaaaaatacttattcca 37850695  T
Q  221 tctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    ||||||||||||||||||| |||||||||||||| | ||||||| | |||||||||||||||||||||||||||    
T  37850696 tctgtctcaaaataataattgtttaaagtttgtacacgattttttaaaaaataattaatggtattgattttaat 37850769  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 37850522 - 37850563
Alignment:
Q  76 attattctctgcgaagaaataatggaaattactctcaactac 117  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  37850522 attactctctgcgaagaaataatggaaattactctcaactac 37850563  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 16904539 - 16904472
Alignment:
Q  223 tgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||||||||||||| |||||||| ||||||  |  |||||||||||||| |||||| || |||||||    
T  16904539 tgtctcaaaataatagtcgtttaaggtttgtgcaaaatttttaagaaaatgattaattgtgttgattt 16904472  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 38512176 - 38512107
Alignment:
Q  225 tctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    ||||||||||||| ||||||||||||||| ||||||||||   ||||||||||||  |||||||||||||    
T  38512176 tctcaaaataatagtcgtttaaagtttgtgtatgatttttttaaaaataattaattttattgattttaat 38512107  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 19609451 - 19609385
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||||||||||||||||||||  ||||| ||||| |||||||||||| |||| | || |||||||    
T  19609451 gtctcaaaataataatcgtttaagatttgtgtatgaattttaagaaaatgattatttgtgttgattt 19609385  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 19612052 - 19611994
Alignment:
Q  232 ataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||||| ||||||||||||| || ||||||||||||| | |||||| || |||||||    
T  19612052 ataataattgtttaaagtttgtgtacgatttttaagaaagtgattaattgtgttgattt 19611994  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 40462464 - 40462398
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||||||||||||| |||||| |||||    |||||||||||||||| |||||| || |||||||    
T  40462464 gtctcaaaataataattgtttaaggtttgagcgtgatttttaagaaaatgattaattgttttgattt 40462398  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 7827887 - 7827953
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||| ||||||||||||||||| ||||||| | |||| ||||||||||||||||| || |||||||    
T  7827887 gtctctaaataataatcgtttaaggtttgtacacgattattaagaaaataattaattgtgttgattt 7827953  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 7072297 - 7072242
Alignment:
Q  239 tcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    |||||||| |||||| ||| ||||||||||||||||||||| || |||||||||||    
T  7072297 tcgtttaaggtttgtgtataatttttaagaaaataattaattgtgttgattttaat 7072242  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 17835532 - 17835466
Alignment:
Q  227 tcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    ||||||||||| ||||||||||||||| || | ||||| | |||||||||||| ||||||||||||||    
T  17835532 tcaaaataatagtcgtttaaagtttgtgtaagttttttga-aaaataattaattgtattgattttaat 17835466  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 1063561 - 1063631
Alignment:
Q  220 atctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||| |||||||| || ||||||||||||| | ||| |||||||||||||| |||||| || |||||||    
T  1063561 atctgtatcaaaatagtagtcgtttaaagtttatgtataatttttaagaaaatgattaattgtgttgattt 1063631  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 8114979 - 8115029
Alignment:
Q  229 aaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaat 279  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||| ||||||    
T  8114979 aaaataatattcgtttaaagtttgtgtacaatttttaagaaaatgattaat 8115029  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 31894172 - 31894238
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||| |||| |||||||||||  ||||| ||||||| |||||||||| |||||| || |||||||    
T  31894172 gtctcacaatattaatcgtttaagatttgtgtatgattattaagaaaatgattaattgtgttgattt 31894238  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 17695494 - 17695416
Alignment:
Q  212 tttattccatctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||| |||||| |||||||||| |||||||||||| ||||||  | |||| ||||| |||| |||||| ||||||||||    
T  17695494 tttactccatccgtctcaaaattataatcgtttaaggtttgtgcacgattattaaggaaatgattaattgtattgattt 17695416  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 28186366 - 28186310
Alignment:
Q  223 tgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaat 279  Q
    |||||||||||| |||| ||||||  |||||  ||||||||||||||||||||||||    
T  28186366 tgtctcaaaatagtaatagtttaagttttgtggatgatttttaagaaaataattaat 28186310  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 34120400 - 34120467
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgatttt 291  Q
    ||||| ||||||||| |||||||||||| |  |||||| |||||||||| |||||| || ||||||||    
T  34120400 gtctctaaataataaccgtttaaagtttatgcatgattattaagaaaatgattaattgtgttgatttt 34120467  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 39691660 - 39691576
Alignment:
Q  206 aaaatatttattccatctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||||| ||||||  | ||||| |||| |||||||||||| ||||||  | |||| |||||||||| |||||| || |||||||    
T  39691660 aaaatatatattcccaccgtctctaaattataatcgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 39691576  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 7703113 - 7703186
Alignment:
Q  217 tccatctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||| |||| || |||||| ||||||||||||||| || |||| ||||| ||||||||||| || |||||||    
T  7703113 tccatccgtcttaacataatagtcgtttaaagtttgtgtaagattattaaggaaataattaattgtgttgattt 7703186  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 4428317 - 4428385
Alignment:
Q  225 tctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    ||||||||||||| |||||||| |||| | ||| |||||||||||||| |||| | || |||||||||||    
T  4428317 tctcaaaataatagtcgtttaaggtttatgtat-atttttaagaaaatgattatttgtgttgattttaat 4428385  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 8721724 - 8721659
Alignment:
Q  225 tctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||||| ||||| || |||||||||| || ||||||||| | |||||||||||| || |||||||    
T  8721724 tctcaaagtaatagtcctttaaagtttttacatgattttttaaaaaataattaatcgttttgattt 8721659  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 27880208 - 27880253
Alignment:
Q  221 tctgtctcaaaataataatcgtttaaagtttgtatatgatttttaa 266  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||    
T  27880208 tctgtttcaaaataatagtcgtttaaggtttgtatatgatttttaa 27880253  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 26885584 - 26885520
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    |||||||||||||||| ||||||   |||||||||||||||||  |||| |||||| ||||||||||    
T  26885584 gtctcaaaataataatagtttaag--ttgtatatgatttttaatgaaatgattaattgtattgattt 26885520  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 49175907 - 49175958
Alignment:
Q  228 caaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaat 279  Q
    |||||||||| |||||||| ||||||  ||||||||||||||||| ||||||    
T  49175907 caaaataatagtcgtttaaggtttgtgcatgatttttaagaaaatgattaat 49175958  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 25141883 - 25141937
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaa 278  Q
    |||| ||||||||| |||||||| |||| |||| ||||||||||||||| |||||    
T  25141883 gtcttaaaataatagtcgtttaaggtttatatacgatttttaagaaaatgattaa 25141937  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 3670038 - 3669965
Alignment:
Q  217 tccatctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||||||||| ||||||||| ||||||||  ||| |  ||||||||||| ||||| |||||| || |||||||    
T  3670038 tccatctgtctgaaaataatagtcgtttaagatttatgcatgatttttaaaaaaatgattaattgtgttgattt 3669965  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 51625237 - 51625169
Alignment:
Q  222 ctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||||| |||| ||| |||||||||||||||  | |||| |||||||||| |||||| || |||||||    
T  51625237 ctgtctctaaattatagtcgtttaaagtttgtgcacgattattaagaaaatgattaattgtgttgattt 51625169  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 32970534 - 32970599
Alignment:
Q  225 tctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattt 290  Q
    ||||||||||||| |||||||| ||| ||||| |||| |||||||||| |||||| || |||||||    
T  32970534 tctcaaaataatattcgtttaaggttcgtatacgattattaagaaaatgattaattgtgttgattt 32970599  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 37177996 - 37177927
Alignment:
Q  224 gtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    ||||||||||||||||  ||||| | |||| || |||||||||||||| ||||||| | ||||||||||||    
T  37177996 gtctcaaaataataattatttaa-gattgtgtacgatttttaagaaaacaattaattgcattgattttaat 37177927  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 41080757 - 41080680
Alignment:
Q  217 tccatctgtctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaatggtattgattttaat 294  Q
    ||||| ||||||||||||||| ||| |||| |||| |  |||| |||||| ||||| |||||| || |||||||||||    
T  41080757 tccatatgtctcaaaataatagtcgattaaggtttatgcatgaattttaaaaaaatgattaattgtgttgattttaat 41080680  T

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Target: scaffold0330 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 5541 - 5488
Alignment:
Q  225 tctcaaaataataatcgtttaaagtttgtatatgatttttaagaaaataattaa 278  Q
    |||| |||| |||||||||||| ||||||| |||||| |||||||||| |||||    
T  5541 tctctaaattataatcgtttaaggtttgtacatgattattaagaaaatgattaa 5488  T

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