View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_8 (Length: 600)
Name: NF1246_low_8
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_8 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 11 - 600
Target Start/End: Complemental strand, 45282887 - 45282298
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282887 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
45282788 |
T |
|
| Q |
111 |
gcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccactttcggtacgtaattcaattatcatcgatcaaaac |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
45282787 |
gcaaggaccattgtcactggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccaccttcggtacttaattcaattatcatcgatcaaaac |
45282688 |
T |
|
| Q |
211 |
atttttattttatttaattaattatgtacttatgaatgaagaaacagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataa |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282687 |
ttttttattttatttaattaattatttacttatgaatgaagaaagagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacataa |
45282588 |
T |
|
| Q |
311 |
ctaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacac |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282587 |
ctaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgatcgaaattactaattaattgattatccatgaatgcagccaacac |
45282488 |
T |
|
| Q |
411 |
cgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
45282487 |
cgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgct |
45282388 |
T |
|
| Q |
511 |
ttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtacc |
600 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
45282387 |
ttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattgtcttgtctcgggtacc |
45282298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 598
Target Start/End: Complemental strand, 45274646 - 45274057
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274646 |
caaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccct |
45274547 |
T |
|
| Q |
111 |
gcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccactttcggtacgtaattcaattatcatcgatcaaaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| | |
|
|
| T |
45274546 |
gcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccgccaccttcggtacgtaattcaattattatctatcaaagc |
45274447 |
T |
|
| Q |
211 |
attttt-attttatttaattaattatgtac-ttatgaatgaagaaacagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacat |
308 |
Q |
| |
|
||||| ||||||||| ||||||| | ||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45274446 |
tttttttattttatttgattaattgtataccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaatttatttttgaagaaaacat |
45274347 |
T |
|
| Q |
309 |
aactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgattgaaattactaattaattgattatccatgaatgcagccaac |
408 |
Q |
| |
|
|||| ||||||||||| | | ||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45274346 |
aactcgcattgaaaagagaaatatatacatataacattgacatatatagccagtgtgatcgaaattactaattaattgattatccatgcgtgcagccaac |
45274247 |
T |
|
| Q |
409 |
accgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctg |
508 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45274246 |
accgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctg |
45274147 |
T |
|
| Q |
509 |
ctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggta |
598 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274146 |
ctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggta |
45274057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 600
Target Start/End: Complemental strand, 45271113 - 45270528
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45271113 |
caaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatggccct |
45271014 |
T |
|
| Q |
111 |
gcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccactttcggtacgtaattcaattatcatcgatcaaaac |
210 |
Q |
| |
|
|||| |||||||||||| |||||||||| | || ||| ||| || | | || ||||| || |||||||||||| |||| |||||||||| | |
|
|
| T |
45271013 |
gcaaagaccattgtcactggtagaaagaaccaaatggccggtaccaacacacagaacactgccaccttttgtacgtaattcagttat-atcgatcaaagc |
45270915 |
T |
|
| Q |
211 |
atttttattttatttaattaattatgtac-ttatgaatgaagaaacagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacat- |
308 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| | |||| ||| |||| ||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45270914 |
--ttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttttgaaaaaaacatt |
45270817 |
T |
|
| Q |
309 |
aactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgattgaaattactaattaattgattatccatgaatgcagccaac |
408 |
Q |
| |
|
|||| |||||||||||||||| ||| | | | ||| | |||||||||| ||| || ||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
45270816 |
aactcacattgaaaagatatatatatagaca---catacatatatatagccggtgttatagaagttactaattaattgatcatccatgcatgcagccaac |
45270720 |
T |
|
| Q |
409 |
accgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
45270719 |
accgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgccggtatgcaagctgtggcatttagaaacataggagatatgtctg |
45270620 |
T |
|
| Q |
509 |
ctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtacc |
600 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||||| ||||||| ||||||||| | ||||||||| ||| || |||| |||||| |
|
|
| T |
45270619 |
ctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtacc |
45270528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45294275 - 45293957
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
45294275 |
caaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggcccc |
45294176 |
T |
|
| Q |
111 |
gcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccactttcggtacgtaattcaattatcatcgatcaaaac |
210 |
Q |
| |
|
| || ||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |
|
|
| T |
45294175 |
ggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaac |
45294076 |
T |
|
| Q |
211 |
atttttattttatttaattaattatgta-cttatgaatgaagaaacagta--tatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaaca |
307 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45294075 |
ttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaaca |
45293976 |
T |
|
| Q |
308 |
taactaacattgaaaagat |
326 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
45293975 |
taactcacattgaaaagat |
45293957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 45303235 - 45302917
Alignment:
| Q |
11 |
caaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccct |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
45303235 |
caaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggcccc |
45303136 |
T |
|
| Q |
111 |
gcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccgccactttcggtacgtaattcaattatcatcgatcaaaac |
210 |
Q |
| |
|
| || ||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |
|
|
| T |
45303135 |
ggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaac |
45303036 |
T |
|
| Q |
211 |
atttttattttatttaattaattatgta-cttatgaatgaagaaacagta--tatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaaca |
307 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45303035 |
ttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaaca |
45302936 |
T |
|
| Q |
308 |
taactaacattgaaaagat |
326 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
45302935 |
taactcacattgaaaagat |
45302917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 337 - 600
Target Start/End: Complemental strand, 45293904 - 45293638
Alignment:
| Q |
337 |
atataacattgacatatata---gccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaagg |
433 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45293904 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45293805 |
T |
|
| Q |
434 |
caatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctggg |
533 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293804 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45293705 |
T |
|
| Q |
534 |
ttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtacc |
600 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||| | ||||||||||||| || ||||||||||| |
|
|
| T |
45293704 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctggtacc |
45293638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 337 - 600
Target Start/End: Complemental strand, 45302864 - 45302598
Alignment:
| Q |
337 |
atataacattgacatatata---gccaatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaagg |
433 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45302864 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45302765 |
T |
|
| Q |
434 |
caatgacatttgaaaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctggg |
533 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302764 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45302665 |
T |
|
| Q |
534 |
ttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtacc |
600 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||| | ||||||||||||| || ||||||||||| |
|
|
| T |
45302664 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctggtacc |
45302598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
13 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
58 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University