View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_80 (Length: 316)

Name: NF1246_low_80
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_80
NF1246_low_80
[»] chr2 (4 HSPs)
chr2 (92-213)||(13448028-13448149)
chr2 (92-159)||(13439919-13439986)
chr2 (92-160)||(13454552-13454620)
chr2 (159-200)||(13454530-13454571)
[»] chr8 (1 HSPs)
chr8 (94-159)||(12641876-12641941)
[»] chr5 (1 HSPs)
chr5 (94-158)||(28385054-28385118)
[»] chr4 (2 HSPs)
chr4 (92-158)||(48961011-48961077)
chr4 (92-158)||(48967178-48967244)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 13448149 - 13448028
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgat 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448149 tcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgat 13448050  T
Q  192 taattcaaatgagtattatcta 213  Q
    ||||||||||||||||| ||||    
T  13448049 taattcaaatgagtattgtcta 13448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 13439986 - 13439919
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc 159  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  13439986 tcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagacc 13439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 13454620 - 13454552
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacct 160  Q
    |||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  13454620 tcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacct 13454552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 13454571 - 13454530
Alignment:
Q  159 cttaaaagattgagagacctcaagctggatgattaattcaaa 200  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  13454571 cttaaaagattgagaaacctcaagccgcatgattaattcaaa 13454530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 12641876 - 12641941
Alignment:
Q  94 aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc 159  Q
    ||||||| || |||||| |||| |||||||||||||||||| |||| |||||||||||||||||||    
T  12641876 aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagacc 12641941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 28385118 - 28385054
Alignment:
Q  94 aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 158  Q
    ||||||| || || ||||||||||||||||| ||||| || |||||||||||||||| |||||||    
T  28385118 aagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagac 28385054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 48961077 - 48961011
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 158  Q
    ||||| ||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| |||||||    
T  48961077 tcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagac 48961011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 48967244 - 48967178
Alignment:
Q  92 tcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 158  Q
    ||||||||| |||| |||||||||||||||  | ||||||||||| || |||||||||  |||||||    
T  48967244 tcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagac 48967178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University