View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_84 (Length: 314)

Name: NF1246_low_84
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_84
NF1246_low_84
[»] chr3 (4 HSPs)
chr3 (14-297)||(39838538-39838821)
chr3 (23-102)||(11365129-11365207)
chr3 (21-69)||(17713352-17713399)
chr3 (21-69)||(19014581-19014628)
[»] chr8 (3 HSPs)
chr8 (23-102)||(43872589-43872667)
chr8 (21-69)||(12181899-12181946)
chr8 (21-69)||(12426327-12426374)
[»] chr5 (4 HSPs)
chr5 (14-69)||(3193524-3193580)
chr5 (44-143)||(27548461-27548560)
chr5 (23-69)||(502884-502929)
chr5 (23-72)||(12263645-12263693)
[»] chr2 (3 HSPs)
chr2 (15-143)||(14952045-14952173)
chr2 (94-156)||(15925633-15925695)
chr2 (15-75)||(32415390-32415449)
[»] scaffold0777 (1 HSPs)
scaffold0777 (14-75)||(5916-5978)
[»] chr7 (3 HSPs)
chr7 (23-122)||(36066194-36066292)
chr7 (23-69)||(42335947-42335992)
chr7 (40-76)||(13431659-13431695)
[»] chr6 (1 HSPs)
chr6 (21-69)||(11274632-11274679)
[»] chr4 (5 HSPs)
chr4 (14-69)||(29118543-29118599)
chr4 (14-76)||(2113910-2113973)
chr4 (40-69)||(4596461-4596490)
chr4 (41-102)||(5627590-5627651)
chr4 (43-104)||(48653769-48653830)
[»] chr1 (1 HSPs)
chr1 (21-69)||(35204221-35204268)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 39838538 - 39838821
Alignment:
Q  14 atattgaaaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaaagcacaacttt 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39838538 atattgaaaatatttttaaagaacctttgattatgaatgaatcttttgcaacaaaagatacaataataatgatattcgactaattaaaaagcacaacttt 39838637  T
Q  114 attaattcattcaggacgtcaaaaatcttaagattgaccctgactttagcgatcacattatattttatagtttaacgactaaagcggagatgaagtaata 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39838638 attaattcattcaggacgtcaaaaatcttaagattgaccctgactttagcaatcacattatattttatagtttaacgactaaagcggagatgaagtaata 39838737  T
Q  214 gtgtaatactcttccgtttctaaacatacgccacaattttaccatgtatattattcaaacaatctattttgaccatatttttta 297  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39838738 gtgtaatactctcccgtttctaaacatatgccacaattttaccatgtatattattcaaacaatctattttgaccatatttttta 39838821  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 11365129 - 11365207
Alignment:
Q  23 atatttttaaagaacttttgattatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaa 102  Q
    ||||||||||| |||||| |||||| ||||||| ||||||||||||| || ||| || ||  |||||||| |||||||||    
T  11365129 atatttttaaataacttt-gattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaa 11365207  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 17713352 - 17713399
Alignment:
Q  21 aaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||| |||||||||||||||||| |||||||| ||||    
T  17713352 aaatatttttagagaa-ttttgattatgaatgaatattttgcaagaaaa 17713399  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 19014581 - 19014628
Alignment:
Q  21 aaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||| |||||||||||||||||| |||||||| ||||    
T  19014581 aaatatttttagagaa-ttttgattatgaatgaatattttgcaagaaaa 19014628  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 43872589 - 43872667
Alignment:
Q  23 atatttttaaagaacttttgattatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaa 102  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||||| |||||| || ||  ||||| || |||||||||    
T  43872589 atatttttaaagaac-tttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattagaataattaaaa 43872667  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12181899 - 12181946
Alignment:
Q  21 aaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  12181899 aaatatttttagagaa-ttttgattatgaatgaatattttgcaacaaaa 12181946  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12426327 - 12426374
Alignment:
Q  21 aaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  12426327 aaatatttttagagaa-ttttgattatgaatgaatattttgcaacaaaa 12426374  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 3193580 - 3193524
Alignment:
Q  14 atattgaaaatat--ttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||||||| ||||    
T  3193580 atattgaaaatatgtttttaaagaacttt-gattatgaatgaatcttttgcaataaaa 3193524  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 27548560 - 27548461
Alignment:
Q  44 ttatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaaagcacaactttattaattcattcaggacgtcaaaaatctta 143  Q
    |||||||||||| ||| |||  |||| ||| || || || || |||||| ||||||||| ||||||||||||| |||| | |||||| |||||| |||||    
T  27548560 ttatgaatgaatttttcgcactaaaaaatataagaagaaagacatttgaataattaaaaggcacaactttattgattcgtacaggacatcaaaagtctta 27548461  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 502884 - 502929
Alignment:
Q  23 atatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  502884 atatttttagagaacttt-gattatgaatgaatcttttgcaaaaaaa 502929  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 12263693 - 12263645
Alignment:
Q  23 atatttttaaagaacttttgattatgaatgaatcttttgcaacaaaagat 72  Q
    |||||||||||||||||| ||||||  ||||||||||||||| |||||||    
T  12263693 atatttttaaagaacttt-gattatagatgaatcttttgcaataaaagat 12263645  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 14952045 - 14952173
Alignment:
Q  15 tattgaaaata--tttttaaagaacttttgattatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaaa-gcacaact 111  Q
    |||||||||||  |||||| ||||| |||||||| |||||||| |||||||||||||  |  || || || |||||| || |||||||||| ||   |||    
T  14952045 tattgaaaatacatttttagagaacctttgattaggaatgaatattttgcaacaaaaattgtaaaaagaaagatattcgaataattaaaaatgc---act 14952141  T
Q  112 ttattaattcattcaggacgtcaaaaatctta 143  Q
    |||||||||| |||| ||| ||||||||||||    
T  14952142 ttattaattcgttcaagacatcaaaaatctta 14952173  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 15925633 - 15925695
Alignment:
Q  94 taattaaaaagcacaactttattaattcattcaggacgtcaaaaatcttaagattgaccctga 156  Q
    ||||||||||||||||||| ||| |||| || ||||| |||||||||||| ||| ||||||||    
T  15925633 taattaaaaagcacaacttcattgattcgtttaggacatcaaaaatcttaggatcgaccctga 15925695  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 32415390 - 32415449
Alignment:
Q  15 tattgaaaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaagataca 75  Q
    ||||||| ||||||||| ||||| |  ||||||||||| |||||||||||||||| |||||    
T  32415390 tattgaatatatttttagagaacctc-gattatgaatgcatcttttgcaacaaaaaataca 32415449  T

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Target: scaffold0777 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 5916 - 5978
Alignment:
Q  14 atattgaaaatat--ttttaaagaacttttgattatgaatgaatcttttgcaacaaaagataca 75  Q
    |||||||||||||  |||||||||| |||||||||||||||||| |||||||| |||| |||||    
T  5916 atattgaaaatatgtttttaaagaa-ttttgattatgaatgaattttttgcaataaaaaataca 5978  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 36066194 - 36066292
Alignment:
Q  23 atatttttaaagaacttttgattatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaaag-cacaactttattaattc 121  Q
    ||||||||| |||| |||||||||||||| |||||||| |||||||| |||||| || || || |||||| ||| ||||||| |||||| |||| |||||    
T  36066194 atatttttagagaa-ttttgattatgaataaatcttttacaacaaaa-atacaagaagaaagacatttgaataactaaaaagacacaacattataaattc 36066291  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 42335992 - 42335947
Alignment:
Q  23 atatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||||    
T  42335992 atatttttaaaaaacttt-gattataaatgaatcttttgcaacaaaa 42335947  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 13431695 - 13431659
Alignment:
Q  40 ttgattatgaatgaatcttttgcaacaaaagatacaa 76  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  13431695 ttgattatgaatgaatctttagcaacaaaaaatacaa 13431659  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 11274632 - 11274679
Alignment:
Q  21 aaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  11274632 aaatatttttagagaa-ttttgattatgaatgaatattttgcaacaaaa 11274679  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 29118543 - 29118599
Alignment:
Q  14 atattgaaaatat--ttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    |||||||||||||  |||||||||||||| |||||||||||||| |||||||| ||||    
T  29118543 atattgaaaatatgtttttaaagaacttt-gattatgaatgaatattttgcaataaaa 29118599  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 2113910 - 2113973
Alignment:
Q  14 atattgaaaatat--ttttaaagaacttttgattatgaatgaatcttttgcaacaaaagatacaa 76  Q
    |||||||||||||  ||||||||||| || |||||||||| |||||||||||| |||| ||||||    
T  2113910 atattgaaaatatgtttttaaagaacctt-gattatgaattaatcttttgcaataaaaaatacaa 2113973  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 4596490 - 4596461
Alignment:
Q  40 ttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||||||||||||||||||||||    
T  4596490 ttgattatgaatgaatcttttgcaacaaaa 4596461  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 5627590 - 5627651
Alignment:
Q  41 tgattatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaa 102  Q
    ||||||| ||||||| ||||||||||||| || |||||| ||  |||||||| |||||||||    
T  5627590 tgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaaa 5627651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 48653769 - 48653830
Alignment:
Q  43 attatgaatgaatcttttgcaacaaaagatacaataataatgatatttgactaattaaaaag 104  Q
    ||||||||||||||||||||||||||| || ||| || || || ||| || |||||||||||    
T  48653769 attatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaaag 48653830  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 35204268 - 35204221
Alignment:
Q  21 aaatatttttaaagaacttttgattatgaatgaatcttttgcaacaaaa 69  Q
    ||||||||||| |||| |||||||||||||||||| |||||||| ||||    
T  35204268 aaatatttttagagaa-ttttgattatgaatgaatattttgcaataaaa 35204221  T

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