View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_85 (Length: 313)
Name: NF1246_low_85
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 7035649 - 7035528
Alignment:
| Q |
85 |
attctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaacacatgttttttactggcatgcttcaaacgaaatca |
184 |
Q |
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| T |
7035649 |
attctacctttgttgaggggaaaattctttgatatgtcaagc-----------aatgtttttaacacatgttttttactggcatgcttcaaacgaaatca |
7035561 |
T |
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| Q |
185 |
atgtattattattcttttccctatagtgagttg |
217 |
Q |
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| T |
7035560 |
atgtattattattcttttccctatagtgagttg |
7035528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 7039203 - 7039080
Alignment:
| Q |
88 |
ctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaacacatgttttttactggcatgcttcaaacgaaatcaatg |
187 |
Q |
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| T |
7039203 |
ctacccttgttgaggggaaaattctttgaaatgtcaagccactcatattcaatgtttttcacacatg--ttttactgccctgcttcaaatgacatctttc |
7039106 |
T |
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| Q |
188 |
tattattattcttttccctatagtga |
213 |
Q |
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| T |
7039105 |
tagtattattcttttccctaaagtga |
7039080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 7896893 - 7896854
Alignment:
| Q |
85 |
attctacctttgttgaggggaaaattctttgatatgtcaa |
124 |
Q |
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| T |
7896893 |
attctacctttgttgaggggaaaattctttgatatgtcaa |
7896854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 7896802 - 7896761
Alignment:
| Q |
176 |
acgaaatcaatgtattattattcttttccctatagtgagttg |
217 |
Q |
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| T |
7896802 |
acgaaatcactgtattattattcttttccctatattgagttg |
7896761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 7880935 - 7880857
Alignment:
| Q |
136 |
tcaatgtttttaacacatgttttttactggcatgcttcaaacgaaatcaatgtattattattcttttccctatagtgagtt |
216 |
Q |
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| T |
7880935 |
tcaatgtttttcacacatgtttt--actgccctgcttcaaatgacatctttctagtattattcttttccctaaagtgagtt |
7880857 |
T |
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