View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_9 (Length: 591)
Name: NF1246_low_9
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 30 - 587
Target Start/End: Complemental strand, 281652 - 281094
Alignment:
| Q |
30 |
tacacagcgatcaatcaagaaatagtataggaaccaaattagtttaaaagaaaaa-caggaagcattaagttttaggtacatctcaaggaacttgccttg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
281652 |
tacacagcgatcaatcaagaaatagtataggaaccaaattagtttaaaagaaaaaacaggaagcattaagttttaggtacatctcaaggaacttgccttg |
281553 |
T |
|
| Q |
129 |
acatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
281552 |
acatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtg |
281453 |
T |
|
| Q |
229 |
cttttccaccatatgtctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatccagggctttgaatac |
328 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
281452 |
cttttccaccatatgcctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatccagggctttgaatac |
281353 |
T |
|
| Q |
329 |
tacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
281352 |
tacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgt |
281253 |
T |
|
| Q |
429 |
ttgaacacctgagtgacccttcctcttgtcgactcatccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
281252 |
ttgaacacctgagtgacccttcctcttgtcgactcgtccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattca |
281153 |
T |
|
| Q |
529 |
ctacaaattggtttcctttcttttgcaccatctgccattcagcttccttcatctcactc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
281152 |
ctacaaattggtttcctttcttttgcaccatctgccattcagcttcctccatttcactc |
281094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 30 - 587
Target Start/End: Original strand, 634200 - 634758
Alignment:
| Q |
30 |
tacacagcgatcaatcaagaaatagtataggaaccaaattagtttaaaagaaaa-acaggaagcattaagttttaggtacatctcaaggaacttgccttg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
634200 |
tacacagcgatcaatcaagaaatagtataggaaccaaattagtttaaaagaaaaaacaggaagcattaagttttaggtacatctcaaggaacttgccttg |
634299 |
T |
|
| Q |
129 |
acatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
634300 |
acatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtg |
634399 |
T |
|
| Q |
229 |
cttttccaccatatgtctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatccagggctttgaatac |
328 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
634400 |
cttttccaccatatgcctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatccagggctttgaatac |
634499 |
T |
|
| Q |
329 |
tacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
634500 |
tacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgt |
634599 |
T |
|
| Q |
429 |
ttgaacacctgagtgacccttcctcttgtcgactcatccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
634600 |
ttgaacacctgagtgacccttcctcttgtcgactcgtccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattca |
634699 |
T |
|
| Q |
529 |
ctacaaattggtttcctttcttttgcaccatctgccattcagcttccttcatctcactc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
634700 |
ctacaaattggtttcctttcttttgcaccatctgccattcagcttcctccatttcactc |
634758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 30 - 587
Target Start/End: Original strand, 820003 - 820561
Alignment:
| Q |
30 |
tacacagcgatcaatcaagaaatagtataggaaccaaattagtttaaaagaaaa-acaggaagcattaagttttaggtacatctcaaggaacttgccttg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820003 |
tacacagcgatcaatcaagaaatagtataggaaccaaattagtttaaaagaaaaaacaggaagcattaagttttaggtacatctcaaggaacttgccttg |
820102 |
T |
|
| Q |
129 |
acatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820103 |
acatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtg |
820202 |
T |
|
| Q |
229 |
cttttccaccatatgtctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatccagggctttgaatac |
328 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820203 |
cttttccaccatatgcctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatccagggctttgaatac |
820302 |
T |
|
| Q |
329 |
tacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820303 |
tacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgt |
820402 |
T |
|
| Q |
429 |
ttgaacacctgagtgacccttcctcttgtcgactcatccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820403 |
ttgaacacctgagtgacccttcctcttgtcgactcgtccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattca |
820502 |
T |
|
| Q |
529 |
ctacaaattggtttcctttcttttgcaccatctgccattcagcttccttcatctcactc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
820503 |
ctacaaattggtttcctttcttttgcaccatctgccattcagcttcctccatttcactc |
820561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 114 - 315
Target Start/End: Original strand, 27498229 - 27498430
Alignment:
| Q |
114 |
aaggaacttgccttgacatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattacccc |
213 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||| ||| || |||| ||||| | | ||||||||||||||||||||||||||||||||| | || |||| |
|
|
| T |
27498229 |
aaggaacttgccttaacgtgggacttgtagtagcttctaagggttgaatgtgtgtagaagtcatcatcagaggtcaagttaaggccagcatctttgcccc |
27498328 |
T |
|
| Q |
214 |
acttgacatattgtgcttttccaccatatgtctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatc |
313 |
Q |
| |
|
| || ||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||| ||||||||||||||||||| |||||||| || |
|
|
| T |
27498329 |
atttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcagcctgattttgtatttctttgcttcacttaccacaaagtc |
27498428 |
T |
|
| Q |
314 |
ca |
315 |
Q |
| |
|
|| |
|
|
| T |
27498429 |
ca |
27498430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 114 - 315
Target Start/End: Original strand, 27519701 - 27519902
Alignment:
| Q |
114 |
aaggaacttgccttgacatggtccttgtagtagcctctgagagttggatgtgagaaaaagtcatcatcagaggtcaagttaaggccagcagcattacccc |
213 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | ||| || |||| ||||| | | ||||||||||||||||||||||||||||||||| | || |||| |
|
|
| T |
27519701 |
aaggaacttgccttaacatgggacttgtagtaacttctaagggttgaatgtgtgtagaagtcatcatcagaggtcaagttaaggccagcatctttgcccc |
27519800 |
T |
|
| Q |
214 |
acttgacatattgtgcttttccaccatatgtctcccaattgttaaccaatgataatatgagtctgattctgtatttctttgcttcactcaccacaaaatc |
313 |
Q |
| |
|
| || |||||||||| |||||||||||||| |||||||||||| ||||||||||||| || |||||| ||||||||||||||||||| |||||||| || |
|
|
| T |
27519801 |
atttcacatattgtgattttccaccatatgactcccaattgttggccaatgataatatcagcctgattttgtatttctttgcttcacttaccacaaagtc |
27519900 |
T |
|
| Q |
314 |
ca |
315 |
Q |
| |
|
|| |
|
|
| T |
27519901 |
ca |
27519902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 321 - 550
Target Start/End: Original strand, 27498603 - 27498832
Alignment:
| Q |
321 |
ttgaatactacttcatcataaagtgatggagatttctgaagggctctccattggccatcattaaacgcccaagtcctacaaactgtcatgccaactgagg |
420 |
Q |
| |
|
||||| ||| |||| ||||||| || || ||||| || ||||| | ||||||||||||||| || ||||||||||||||||||||||| || | ||||| |
|
|
| T |
27498603 |
ttgaagacttcttcgtcataaaccgaaggggatttttgtagggcccgccattggccatcattgaaagcccaagtcctacaaactgtcatacctagtgagg |
27498702 |
T |
|
| Q |
421 |
atgcatgtttgaacacctgagtgacccttcctcttgtcgactcatccgcagcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttg |
520 |
Q |
| |
|
|||| |||||||| |||| |||||| ||||||| || || ||||| |||||||| | ||| ||||| || |||||||||||||||| ||||||||| || |
|
|
| T |
27498703 |
atgcttgtttgaaaacctcagtgacttttcctctggtggagtcatctgcagcaaacatcattaaccagtatgtgttgaatccatttatatagaaaggctg |
27498802 |
T |
|
| Q |
521 |
gtcattcactacaaattggtttcctttctt |
550 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
27498803 |
accattcaccacaaattggtttcctttctt |
27498832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 371 - 550
Target Start/End: Original strand, 27520088 - 27520267
Alignment:
| Q |
371 |
ttggccatcattaaacgcccaagtcctacaaactgtcatgccaactgaggatgcatgtttgaacacctgagtgacccttcctcttgtcgactcatccgca |
470 |
Q |
| |
|
|||||||||| | || |||||||| |||||||||||||| || | ||||| ||| |||||||| |||| ||||| ||| ||| || || ||||| || |
|
|
| T |
27520088 |
ttggccatcagtgaaagcccaagttctacaaactgtcatacctagtgaggttgcttgtttgaaaacctcggtgacttttcgtctggtggagtcatctgcc |
27520187 |
T |
|
| Q |
471 |
gcaaataccatcaaccaataagtgttgaatccatttacatagaaaggttggtcattcactacaaattggtttcctttctt |
550 |
Q |
| |
|
||||| | |||||||||||| | |||||||||||||| ||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
27520188 |
gcaaacatcatcaaccaatatgcgttgaatccatttatatagaaaggctgactattcaccacaaattggtttcctttctt |
27520267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University