View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_92 (Length: 290)
Name: NF1246_low_92
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38548735 - 38548973
Alignment:
| Q |
1 |
caagtccaacgttaaattcaaagcacatgtgtgttaacaaatagattagtgaccgagcctattgatttctaacgtgatatttctttgcttatgatctaac |
100 |
Q |
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| T |
38548735 |
caagtccaacgttaaattcaaagcacatgtgtgttaacaaatagattagtgaccgagcctattgatttctaacgtgatatttgtttgcttatgatctaac |
38548834 |
T |
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| Q |
101 |
ttgcagattagctgcagaaaagcaacatgtgctcaactctgaaacaatgctaaatagctatccgctatcaatgattacaaaacatacatttaatttaata |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| |
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| T |
38548835 |
ttgcagattagctgcagaaaagcaacaggtgctcaactctgaaacaatgctatattctaaatagctatcaatgattacaaaacatacatttaatttaata |
38548934 |
T |
|
| Q |
201 |
atttgcagttccctttatcatacaaacatgtttatagtt |
239 |
Q |
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| T |
38548935 |
atttgcagttctctttatcatacaaacatgtttatagtt |
38548973 |
T |
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