View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_94 (Length: 288)
Name: NF1246_low_94
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_94 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 46 - 288
Target Start/End: Complemental strand, 5396004 - 5395762
Alignment:
| Q |
46 |
aataatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagattttaatagcatgtcacctataatacacaaa |
145 |
Q |
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| T |
5396004 |
aataatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagcttttaatagcatgtcacctatactacacaaa |
5395905 |
T |
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| Q |
146 |
catcatgattcaacatcacattatctttgaaaagnnnnnnnnnntgaactggtggttagctaaagcatctggcactgtcaaagcaagttatttaaccatt |
245 |
Q |
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| T |
5395904 |
catcatgattcaacatcacattatctttgaaaagaaaaaaaaaatgaactggtggttagctaaagcatctggcactggcaaagcaagttatttaagcatt |
5395805 |
T |
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| Q |
246 |
gctctatgtttttccatatcctccaccttttaatttttatttt |
288 |
Q |
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| T |
5395804 |
gttctatgtttttcaatatcctctcccttttaatttttatttt |
5395762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 5392037 - 5391993
Alignment:
| Q |
190 |
tgaactggtggttagctaaagcatctggcactgtcaaagcaagtt |
234 |
Q |
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| T |
5392037 |
tgaactggtggttagctaaagcaactggcactggcaaagcaagtt |
5391993 |
T |
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