View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_98 (Length: 285)

Name: NF1246_low_98

Description: NF1246

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1246_low_98

[»] chr4 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 136; E-Value: 5e-71

Query Start/End: Original strand, 64 - 199

Target Start/End: Complemental strand, 44475908 - 44475773

Alignment:

Q	64	aagtcagtgttaagtatttatatgagatcaccctttctcattgtcctgatctctgcataggaaaaatgaacatgagattagatgtcataaacacatagta	163	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44475908	aagtcagtgttaagtatttatatgagatcaccctttctcattgtcctgatctctgcataggaaaaatgaacatgagattagatgtcataaacacatagta	44475809	T

Q	164	catgtgatgcacaaattcataaaatatatacatgta	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44475808	catgtgatgcacaaattcataaaatatatacatgta	44475773	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 69 - 130

Target Start/End: Original strand, 38452328 - 38452390

Alignment:

Q	69	agtgttaagtatttatatg-agatcaccctttctcattgtcctgatctctgcataggaaaaat	130	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38452328	agtgttaagcatttatatggagatcaccctttctcatcatcataacctctgcataggaaaaat	38452390	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]