View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_high_1 (Length: 680)
Name: NF12470_high_1
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Original strand, 3017999 - 3018634
Alignment:
| Q |
1 |
agaatgttttgtgccaaattagttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgtatgttt----atagatattgacaaattt |
96 |
Q |
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| T |
3017999 |
agaattttttgtgccaaattagttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgtatgtttgtttatagatattgccaaattt |
3018098 |
T |
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| Q |
97 |
ctttgcttgattattctaaaaggtaagtttcatatgcaattcatctagataatattctaattacatcctatggtgactttataagcaaagaaatcatttt |
196 |
Q |
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| T |
3018099 |
ctttgcttgattattctaaaaggtaagtttcatatgcaattcatctagataatattctaattacatcctatggtgactttataagcaaagaaatcatttt |
3018198 |
T |
|
| Q |
197 |
ttaggttcattgtttaacggatgtgtctagtctataccattattcagggaacattnnnnnnnnttgtttataataatggatgggtacattacaacgatgt |
296 |
Q |
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| T |
3018199 |
ttaggttcattgtttaacggatgtgtctagtctataccgttatttagggaacattaaaaaaaattgtttataataatggatgggtacattacaacgatgt |
3018298 |
T |
|
| Q |
297 |
atcagccccaccgccagacgtgtccatttgagtgaatcaatctttcttttagatggcttggatacatacctcatagggttcgatacatgtcaaagcgggt |
396 |
Q |
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| T |
3018299 |
atcagccccaccgc-agacgtgtccatttgagtgaatcaatctttcttttagatggcttggatacatacctcatagggttcgatacatgtcaaagcgggt |
3018397 |
T |
|
| Q |
397 |
gtttcaccagtttggttacgtccagaccatcccaagccatccacataagagtgcaaatcccaaggtgaacacaactagcgcaatatcttgattatgtgtt |
496 |
Q |
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| T |
3018398 |
gttgcgccagtttggttacgtccagaccatcccaagccatccacataagagtgcaaatcccaaggtga--acaactagcataatatcttgattatgtgtt |
3018495 |
T |
|
| Q |
497 |
aaatcggtgagatttgggtatgcctgctccgattggtctaaagacaacaattgaatacataagatggtattttgccatttcgcatccatacattgcatgt |
596 |
Q |
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| T |
3018496 |
aaatcagtgagatttgggtatgcctgctccgactggtctaaagacaacaattgaatacataagatggtattttgccatttcgcatccatacattgcatgt |
3018595 |
T |
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| Q |
597 |
cagcaagaggatgctcatatcctgattcgtcaatttgcc |
635 |
Q |
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| T |
3018596 |
cagcaggaggatgctcatatcctgattcgtcaatttgcc |
3018634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 3021110 - 3021251
Alignment:
| Q |
1 |
agaatgttttgtgccaaattagttgttt-atctttaaaaatattttcta-------gttaagaccaaacttcatatatgtatgtttata--gatattgac |
90 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||| | |
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| T |
3021110 |
agaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaagaccaaacttcatat-tgtatgtttatacagatattgcc |
3021208 |
T |
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| Q |
91 |
aaatttctttgcttgattattctaaaaggtaagtttcatatgc |
133 |
Q |
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| T |
3021209 |
aaaagtcttttcttgactattctaaaaggtaagttgcatatgc |
3021251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 24141722 - 24141665
Alignment:
| Q |
294 |
tgtatcagccccaccgccagacgtgtccatttgagtgaatcaatctttcttttagatg |
351 |
Q |
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|||||||||||||||||||||| ||||| || ||| |||||| ||||| |||| |||| |
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| T |
24141722 |
tgtatcagccccaccgccagacatgtccgttcgagcgaatcagtctttattttggatg |
24141665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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