View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_low_11 (Length: 245)
Name: NF12470_low_11
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_11 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5054 - 5277
Alignment:
| Q |
1 |
cttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcatctgataataa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054 |
cttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcatctgataataa |
5153 |
T |
|
| Q |
101 |
acaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgattcaactttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5154 |
acaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactctgattcaactttgg |
5253 |
T |
|
| Q |
201 |
acttgtatttcttaacatgcacaa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
5254 |
acttgtatttcttaacatgcacaa |
5277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3898723 - 3898946
Alignment:
| Q |
1 |
cttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcatctgataataa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898723 |
cttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcatctgataataa |
3898822 |
T |
|
| Q |
101 |
acaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgattcaactttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3898823 |
acaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactcggattcaactttgg |
3898922 |
T |
|
| Q |
201 |
acttgtatttcttaacatgcacaa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3898923 |
acttgtatttcttaacatgcacaa |
3898946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 46283560 - 46283361
Alignment:
| Q |
2 |
ttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcatctgataataaa |
101 |
Q |
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||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |
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| T |
46283560 |
ttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttcatcttataataaa |
46283461 |
T |
|
| Q |
102 |
caaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgattcaactttgga |
201 |
Q |
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|||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
46283460 |
aaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctgattcaactttgga |
46283361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 27125481 - 27125440
Alignment:
| Q |
51 |
tcttaaactcagccatatacctttgataatcacctttcatct |
92 |
Q |
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||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
27125481 |
tcttaaactcagcaagatacctatgataatcacctttcatct |
27125440 |
T |
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