View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_low_2 (Length: 627)
Name: NF12470_low_2
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 36000747 - 36000140
Alignment:
| Q |
1 |
gatgaccaacaataacaatttattcccccaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttcaccct |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36000747 |
gatgaccaacaataacaatttattcccctaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttcaccct |
36000648 |
T |
|
| Q |
101 |
a----ttcctaatttatttnnnnnnncaa----tttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatgatgt |
192 |
Q |
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| T |
36000647 |
agctattcctaatttatttaaaaaaaaaaaaaatttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatgatgt |
36000548 |
T |
|
| Q |
193 |
cagatagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttgaagcacctgctactgctaaaagagtcaaaatatctatttctct |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36000547 |
cagatagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttgaagcacctgctactgctaaaagaatcaaaatatctatttctct |
36000448 |
T |
|
| Q |
293 |
tgtttctcaagccgaacgtccaggcagcatggtaacattcatttatcaaaatcccttgttgcagtggatcattagtgatataaagttgcacgcttgtagt |
392 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36000447 |
tgtttctcaagccgaacgtcaaggcagcatggtaacattcatttatcaatatcccttgttgcagtggatcattagtaatataaagttgcacgcttgtagt |
36000348 |
T |
|
| Q |
393 |
aaattcatcatttcaatgtgaaagtgcaacggtaaaactgttaagagactttctcattgtagaaatcttcctaattttattcagttcttttgtgtcttgc |
492 |
Q |
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| T |
36000347 |
aaattcatcatttcaatgtgaaagtgcaatggtaaaactgttaagagactttctcattgtagaaatcttcctaattttattcagttcttttgtgtcttgc |
36000248 |
T |
|
| Q |
493 |
ttttgttggtattaatcaacgatgattatgtttttatttacaatgcattatgatgttgcagtttgtgaaatttggccatttatacctttttaattaacta |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36000247 |
ttttgttggtattaatcaacgatgattatgtttttatttactatgcattatga-----------gtgaaatttggccatttatacctttttaattaacta |
36000159 |
T |
|
| Q |
593 |
tcgatcaaattagtgtgct |
611 |
Q |
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||||||||||||||||||| |
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| T |
36000158 |
tcgatcaaattagtgtgct |
36000140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 138 - 304
Target Start/End: Complemental strand, 36021750 - 36021586
Alignment:
| Q |
138 |
aatgaagaaaataattctta-agaaaatactcatgacagattctaaaaaatgatgtcagatagataaattgcattaacattgtgttgaaacaatgtattg |
236 |
Q |
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|||||||||| ||||||||| | ||||||||| ||| | ||||| ||||| |||||| ||| ||||| | ||||||||||||||||||| ||||| |
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| T |
36021750 |
aatgaagaaattaattcttacaaaaaatactcgtgatatattctcaaaaaccatgtcaaata----aattgtaataacattgtgttgaaacaacatattg |
36021655 |
T |
|
| Q |
237 |
gacaggt-cttt--tgaagcacctgctactgctaaaagagtcaaaatatctatttctcttgtttctcaagc |
304 |
Q |
| |
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||||||| |||| ||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
36021654 |
gacaggtactttgttgaagca--tgctactgctagaagagtcaaaaattctatttatcttgtttctcaagc |
36021586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 363 - 496
Target Start/End: Complemental strand, 36021544 - 36021412
Alignment:
| Q |
363 |
attagtgatataaagttgcacgcttgtagtaaattcatcatttcaatgtgaaagtgcaacggtaaaactgttaagagactttctcattgtagaaatcttc |
462 |
Q |
| |
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|||||| | ||||||||| | | || || |||||||||| ||||||||||||||| || || ||| | ||||| ||||||| |||| ||||||||||| |
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| T |
36021544 |
attagtaacataaagttgtatgtttataataaattcatcctttcaatgtgaaagtacatcgataatattgttac-agactttaccattatagaaatcttc |
36021446 |
T |
|
| Q |
463 |
ctaattttattcagttcttttgtgtcttgctttt |
496 |
Q |
| |
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||||||||| || ||||||||||| ||||||| |
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| T |
36021445 |
ctaattttactctcttcttttgtgttctgctttt |
36021412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 36021861 - 36021803
Alignment:
| Q |
42 |
gaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttcaccct |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||| ||||||||| | ||||||||||| |
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| T |
36021861 |
gaggacttgaataataaatctttgcatgaacgttcaaaatcggtatggatcttcaccct |
36021803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 36016500 - 36016448
Alignment:
| Q |
197 |
tagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttg |
249 |
Q |
| |
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||||||||||||| || |||||||||||||||| |||||||| |||||||| |
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| T |
36016500 |
tagataaattgcaatagcattgtgttgaaacaacacattggacatgtcttttg |
36016448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 449 - 530
Target Start/End: Complemental strand, 16118897 - 16118816
Alignment:
| Q |
449 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttggtattaatcaacgatgattatgtttttatt |
530 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||||| |
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| T |
16118897 |
ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttatt |
16118816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 449 - 530
Target Start/End: Original strand, 16340764 - 16340845
Alignment:
| Q |
449 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttggtattaatcaacgatgattatgtttttatt |
530 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||||| |
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| T |
16340764 |
ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttgttggtattaatcaataatgattgtgtttttatt |
16340845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 12898867 - 12898919
Alignment:
| Q |
449 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttgttgg |
501 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
12898867 |
ttgtagaaatcttcctaattttattcagttcttttgtgtcttgattttattgg |
12898919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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