View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_low_3 (Length: 549)
Name: NF12470_low_3
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 25032393 - 25031974
Alignment:
| Q |
18 |
ccctctaccggacccactcctcatccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctc |
117 |
Q |
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| T |
25032393 |
ccctctaccggacccactcctcttccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctc |
25032294 |
T |
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| Q |
118 |
tggcagaatctacaagccttcgaattctccgacgactcacacgaagacggcaactggccaataatgttcagaaggtttgcattcttcgtcaacgccgtgc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25032293 |
tggcagaatctacaagccttcgaattctccgacgactcatacgaagacggcaactggccaataatgttcagaaggtttgcattcttcgtcaacgccgtgc |
25032194 |
T |
|
| Q |
218 |
tctccctccatcgatcccgcgatattaaaaggtttagtctcaccagcggcatggtggatgatgactggtttcgtagcgactgcttcgacgtatgggttcg |
317 |
Q |
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| T |
25032193 |
tctccctccgtcggtcccgtgatattaaaaggtttcgtctcaccagcggcatggtggatgatgactggtttcgtagcgactgcttcgacgtatgggttcg |
25032094 |
T |
|
| Q |
318 |
tgctgccattgggcctcaacttgaagaactgtttgtttcccttgaatactgcgatgaagaccggcaagtactggttccttcttctctcctgaattgcacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25032093 |
tgctgccattgggcctcaacttgaagaactgtttgtttcccttgaatactgcgatgaagaccggcaagtactggttccttcttctctcctgaattgcacc |
25031994 |
T |
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| Q |
418 |
aatctcgtttccctcaggta |
437 |
Q |
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| T |
25031993 |
aatctcgtttccctcaggta |
25031974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 539
Target Start/End: Complemental strand, 25031965 - 25031926
Alignment:
| Q |
500 |
tatggttgctttcatgatttcatctcttgttctctctctg |
539 |
Q |
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| T |
25031965 |
tatggttgctttcatgatttcatctcttgttctctctctg |
25031926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 25922774 - 25922842
Alignment:
| Q |
52 |
tcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
120 |
Q |
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| T |
25922774 |
tcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctctgg |
25922842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 20505315 - 20505354
Alignment:
| Q |
398 |
cttctctcctgaattgcaccaatctcgtttccctcaggta |
437 |
Q |
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| T |
20505315 |
cttccctcttgaattgcaccaatctcgtttccctcaggta |
20505354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 24523217 - 24523267
Alignment:
| Q |
43 |
catatactctcattcctcccaaccagaacctccgtggcaacaacgagtctc |
93 |
Q |
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| T |
24523217 |
catatactctccttcctaccaacaagaacctccgtggcaacgatgagtctc |
24523267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 30076801 - 30076879
Alignment:
| Q |
42 |
ccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
120 |
Q |
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||||||||| || ||||||||||| |||||||||| ||||| | || |||| |||||| |||||||||| | |||||| |
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| T |
30076801 |
ccatatactatccttcctcccaactcgaacctccgtcgcaaccatgactctcgtctctcacaggtggcgacacctctgg |
30076879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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