View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_low_4 (Length: 448)
Name: NF12470_low_4
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 1068126 - 1068545
Alignment:
| Q |
11 |
atattttttgttaacatataaagataaatatgtccaaatggcagattgatggaatatgcatcttaaaagaacatacatataattaacctatctccactga |
110 |
Q |
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|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
1068126 |
atattttttgttaacatatataaataaatatgtc-aaatggcagattgatggaatatgcatcttaaaagaacatacctataattaacctatctccattga |
1068224 |
T |
|
| Q |
111 |
tcaatcataaatccaagtnnnnnnnnnnnnngaataaaatgaaaatacctaatgcatgaccaaacagaaataaatgatttagttgctata--taaatttc |
208 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
1068225 |
tcaatcataaattcaagtaaaaaaaata---gaataaaatgaaaatacctaatgcatgaccaaacaaaaacaaatgatttagttgctatatataaatttc |
1068321 |
T |
|
| Q |
209 |
acagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatggatcggccaccgcaaatcaga |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
1068322 |
acagcaaatcatctgatagcataagataaacagatttaaggattacctcaaccgtcgaaatcaatacgtcaccaaaatggatcggccaccgcaaatcaga |
1068421 |
T |
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| Q |
309 |
gaaatggtctccaaaattcattacgatgcaggtatcaaattcagagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1068422 |
gaaatggtctccaaaattcattacgatgcaggtatcaaattcagagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaat |
1068521 |
T |
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| Q |
409 |
tgagcatcaattagaggttcagag |
432 |
Q |
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|||||||||||||||||||||||| |
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| T |
1068522 |
tgagcatcaattagaggttcagag |
1068545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 47964184 - 47964269
Alignment:
| Q |
203 |
aatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatgg |
288 |
Q |
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||||||||| |||| ||| | ||| |||||||||| |||||||||| | ||||| ||| ||| |||||||||| |||||||||||| |
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| T |
47964184 |
aatttcacaacaaaccatttaataccataagagaagcagatttaagcactaccttaacggtcaaaatcaaatcatcaccgaaatgg |
47964269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 94 - 341
Target Start/End: Complemental strand, 768487 - 768241
Alignment:
| Q |
94 |
taacctatctccactgatcaatcataaatccaagtnnnnnnnnnnnnngaataaaatgaaaatacctaatgcatgaccaaacagaaataaatgatttagt |
193 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
768487 |
taacctatctccattgatcaatcataaatccaagt---aaaaaaaatagaataaaatgaaaatacctaatgcatgaccaaacagaaacaaatgatttagt |
768391 |
T |
|
| Q |
194 |
tgc--tatataaatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatggatc |
291 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
768390 |
tgctatatataaatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaatcgtcgaaatcaaatcgtcaccaaaatggatc |
768291 |
T |
|
| Q |
292 |
ggccaccgcaaatcagagaaatggtctccaaaattcattacgatgcaggt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
768290 |
ggccaccgcaaatcagagaaatggtctccaaaattcattacgatgcaggt |
768241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 768145 - 768065
Alignment:
| Q |
352 |
gagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaattgagcatcaattagaggttcagag |
432 |
Q |
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| T |
768145 |
gagaaaaagtgaaattttagaaatcaaattcagagaattggattttatctatttaattgagcatcaattagaggttcagag |
768065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 23739481 - 23739396
Alignment:
| Q |
203 |
aatttcacagcaaatcatctgatagcataagagaaacagatttaaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatgg |
288 |
Q |
| |
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||||||||| |||||||||| ||| ||||| |||| ||||| |||| |||| || ||| || |||||||||||||| | ||||||| |
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| T |
23739481 |
aatttcacaacaaatcatctaataccataaaagaagcagatctaagcattagcttaacggttgaaatcaaatcgtcgctgaaatgg |
23739396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 39074611 - 39074806
Alignment:
| Q |
148 |
aatgaaaatacctaatgcatgaccaaacagaaataaatgatttagttgctatata--aatttcacagcaaatcatctgatagcataagagaaacagattt |
245 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||| ||| |||||||||| || ||||||||| ||||||||||||||||||||||||| || |||| |
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| T |
39074611 |
aatgaaaatacctaattcatgaccaaacagaaacaaacgatatagttgctatttatcaatttcacaacaaatcatctgatagcataagagaagcaaattt |
39074710 |
T |
|
| Q |
246 |
aaggattacctcaaccgtcgaaatcaaatcgtcaccgaaatggatcggccaccgcaaatcagagaaatggtctccaaaattcattacgatgcaggt |
341 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||| ||| ||||||||||| |||||||| |
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| T |
39074711 |
aaggattacctcaaccgtcgaaatcaaattgtcagcgaaatggatcggccaccacgacccagagaaatggtttccgaaattcattacaatgcaggt |
39074806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 24762964 - 24762891
Alignment:
| Q |
19 |
tgttaacatataaagataaatatgtccaaatggcagattgatggaatatgcatcttaaaagaacatacatataat |
93 |
Q |
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|||||||||||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
24762964 |
tgttaacatatataaataaagatgtc-aaatggcaggttgatggaatatgcatcttaaaagaacatacctataat |
24762891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 52130399 - 52130326
Alignment:
| Q |
19 |
tgttaacatataaagataaatatgtccaaatggcagattgatggaatatgcatcttaaaagaacatacatataat |
93 |
Q |
| |
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|||||||||||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
52130399 |
tgttaacatatataaataaagatgtc-aaatggcaggttgatggaatatgcatcttaaaagaacatacctataat |
52130326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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