View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12470_low_5 (Length: 399)
Name: NF12470_low_5
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_5 |
 | |
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| [»] scaffold0303 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 18119712 - 18119348
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
18119712 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgacaacgttacatttcaaacgaccactcgca |
18119613 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18119612 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
18119513 |
T |
|
| Q |
219 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatga |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18119512 |
gtgcaggctgagttgcgggctgcatatctgttcgcaaactgttagcaaactcccaatcatctagcataaatttagctctttcaatcacagctgcacatga |
18119413 |
T |
|
| Q |
319 |
ctccgtaatatcctcccaaaactttaaattacggcgtttccataaactccataatagcataacca |
383 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18119412 |
ctccgtaacatcctcccaaacctttaaattacggtgtttccataaactccataatagcataacca |
18119348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 10770988 - 10770624
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || |
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|
| T |
10770988 |
aaaagttccttcgtcatctcgcaagaaaatgccaacaccgatgcagttatggggtatagaaaaagccgcgtcactgttacatttcaaacgaccactcgca |
10770889 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
10770888 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacaacagctaatctgttcacagcagcagcctgttgctgcagaccgtgtg |
10770789 |
T |
|
| Q |
219 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatga |
318 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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|
| T |
10770788 |
gtgcaggctgagttgcgagctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttaactctttcaatcgcatctgcacatga |
10770689 |
T |
|
| Q |
319 |
ctccgtaatatcctcccaaaactttaaattacggcgtttccataaactccataatagcataacca |
383 |
Q |
| |
|
|||||||| ||||||||||| | ||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
10770688 |
ctccgtaacatcctcccaaaccattatattagggcgtttccataaactccaaaatagcataacca |
10770624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 28860561 - 28860197
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |
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|
| T |
28860561 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccacgacaacgttacatttcaaacgaccactcgca |
28860462 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28860461 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagttgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
28860362 |
T |
|
| Q |
219 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
28860361 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagatctttcaatcacagcggcacatga |
28860262 |
T |
|
| Q |
319 |
ctccgtaatatcctcccaaaactttaaattacggcgtttccataaactccataatagcataacca |
383 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28860261 |
ctctgtaacatcctcccaaacctttaaattacggcgtttccatatactccataatagcataacca |
28860197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 13968 - 13604
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13968 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttataggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcgca |
13869 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
13868 |
gggggctgccaattgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgatgtagaccgtgtg |
13769 |
T |
|
| Q |
219 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatga |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13768 |
gtgcaggttgagttgtgggctgcatatctgttcggaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcactgctgcacatga |
13669 |
T |
|
| Q |
319 |
ctccgtaatatcctcccaaaactttaaattacggcgtttccataaactccataatagcataacca |
383 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13668 |
cttcgtaacatcctcccaaacctttaaattacagcgtttccataaactccataatagcataacca |
13604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 22736834 - 22737192
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
22736834 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccgatgcggttatgggggatagaaaaagtcgcgtcaacgttacatttcaaacgaccactcgca |
22736933 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22736934 |
gggggctgccatttgatctgttgcagttcagcagtagtagatgccgcaagaacagcaactgaactgttcacagcagcagcctgttgctgcagacc----g |
22737029 |
T |
|
| Q |
219 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatga |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22737030 |
gtgcaggctgagttgcgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctg--catga |
22737127 |
T |
|
| Q |
319 |
ctccgtaatatcctcccaaaactttaaattacggcgtttccataaactccataatagcataacca |
383 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
22737128 |
ctccgtaacatcctcccaaacctttaaattacggtgtttccataaacttcataatagcataacca |
22737192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 17752634 - 17752986
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17752634 |
aaaagtcccttcgtcgtctcgcaagaaaatttcagcaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcgca |
17752733 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17752734 |
gggggctgccacttaatctgttgcggttcagaagtagcagatgccacaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
17752833 |
T |
|
| Q |
219 |
gtgcaggctgagttgtgggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatga |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17752834 |
gtgca------------ggctgcatatctgttcgcaaactgttagcgaactcccaatcatccagcataactttagttctttcaatcacagctgcacatga |
17752921 |
T |
|
| Q |
319 |
ctccgtaatatcctcccaaaactttaaattacggcgtttccataaactccataatagcataacca |
383 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17752922 |
ctccgtaacatcctcccaaacctttaaattacagcgtttccataaactccataatagcataacca |
17752986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 28942595 - 28942804
Alignment:
| Q |
19 |
aaaagtcccttcgtcgtctcgcaagcaaatgccaacaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcaca |
118 |
Q |
| |
|
|||||||||||||||||| | | ||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| || ||||||||| || |
|
|
| T |
28942595 |
aaaagtcccttcgtcgtcccaaagacaaataccaacaccggtgcgattatgggggatagaaaaagctgcatcaacgttacatttgaatcgaccactcgca |
28942694 |
T |
|
| Q |
119 |
gggggctgccatttgatctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtg |
218 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| || | ||||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
28942695 |
gggggctgccacttgatctgatgcggttcagcaataactgatgctgcaggaacataagctgaactgtcatcagcagcaaactgttgcttcagaccgtgtg |
28942794 |
T |
|
| Q |
219 |
gtgcaggctg |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
28942795 |
gtgcaggctg |
28942804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 383
Target Start/End: Complemental strand, 27492783 - 27492668
Alignment:
| Q |
268 |
ctcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcccaaaactttaaattacggcgtttccataaactc |
367 |
Q |
| |
|
|||||||||||| |||| ||| | |||| ||||||||| | || |||| |||||| | ||||||||||| ||||||||||||| ||||||| ||| || |
|
|
| T |
27492783 |
ctcccaatcatccagcaaaacccttgctcgctcaatcacaacagcccatgtctccgttacatcctcccaaacctttaaattacggtgtttccacaaaatc |
27492684 |
T |
|
| Q |
368 |
cataatagcataacca |
383 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
27492683 |
cataaaatcataacca |
27492668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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