View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_low_6 (Length: 363)
Name: NF12470_low_6
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 163 - 344
Target Start/End: Complemental strand, 224689 - 224505
Alignment:
| Q |
163 |
ttaaattgatgtgtcctccctcgctcccttgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgttgttgtgaagctcgaaaatt |
262 |
Q |
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| T |
224689 |
ttaaattgatgtgtcctacctcgctcccttgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgttgttgtgaagctccaaaatt |
224590 |
T |
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| Q |
263 |
gcaat---ggagagcaatgggatgtttgttgtacacgtttaggtcgttcaggactgcgattggggaaaggattcattaaatttgc |
344 |
Q |
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| T |
224589 |
gcaatggaggagagcaatgggatgtttgttgtacacgtttaggtcgttcaggactgcgattggggaaaggattcattaaatttgc |
224505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 224862 - 224717
Alignment:
| Q |
21 |
agtgtcctaggcctatgaaaaggtccagggttgaaatcaattatgctgatgattcaccaagtgaggatgaaggaacagaattaaacccttcttttacttc |
120 |
Q |
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| T |
224862 |
agtgtcctagacctacgaaaaggtccagggttgaaatcaattatgctgatgattcaccaagtgaggatgaaggaacagaattaaacccttcttttacttc |
224763 |
T |
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| Q |
121 |
tacctataagtatagaactctggtgagtgaggattttagtttttaa |
166 |
Q |
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| T |
224762 |
tacctataagtatagaactctggtgagtgaggattttagtttttaa |
224717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 210400 - 210345
Alignment:
| Q |
1 |
tagtggagaagcagagaccaagtgtcctaggcctatgaaaaggtccagggttgaaa |
56 |
Q |
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| T |
210400 |
tagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaa |
210345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 216774 - 216723
Alignment:
| Q |
192 |
tgtgcagtatattaatgctgattttgcatcaaagcatctgaaacgaaatgtt |
243 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| | ||||||| |
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| T |
216774 |
tgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgtt |
216723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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