View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12470_low_7 (Length: 336)
Name: NF12470_low_7
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12470_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 49163997 - 49164314
Alignment:
| Q |
5 |
tttctatgcatgctaacataaatttcaatgtactgcagagaattccaaatgctttcaccgagaaatatatcggtgatttatcaaagccaatgtttctcaa |
104 |
Q |
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| T |
49163997 |
tttctatgcatgctaacataaatttcaatgtactgcagagaattccaaatgctttcactgagaaatatatcggtgatttatcaaagccaatgtttctcaa |
49164096 |
T |
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| Q |
105 |
gactcccgatgtcaaagaatgggaaatacatttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacacattattcatta |
204 |
Q |
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| T |
49164097 |
gactcccgatgtcaaagaatgggaaatacatttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacacattattcatta |
49164196 |
T |
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| Q |
205 |
gatcatggtcacatggtgctgtttcaatatcagaaaacctctcattttgaggtttacatttttgacaagagtacttttgaaatcgaatatcgtgttgatg |
304 |
Q |
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| T |
49164197 |
gatcatggtcacatggtgctgtttcaatatcagaaaacctctcattttgaggtttacatttttgacaagagtacttttgaaatcgaatatcgtgttgatg |
49164296 |
T |
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| Q |
305 |
gtaataatcaacatgaac |
322 |
Q |
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| T |
49164297 |
gtaataatcaacatgaac |
49164314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 12880793 - 12880920
Alignment:
| Q |
173 |
gttggaaggaatttgctacacattattcattagatcatggtcacatggtgctgtttcaatatcagaaaacctctcattttgaggtttacatttttgacaa |
272 |
Q |
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| T |
12880793 |
gttggaaggaatttgctacacgttattcattagaccatggacacatgacggtgtttcaatataaaaaaatatcacattttgaggtttacatattttacca |
12880892 |
T |
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| Q |
273 |
gagtacttttgaaatcgaatatcgtgtt |
300 |
Q |
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| T |
12880893 |
gagtacttttgaaattgaatatcatgtt |
12880920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 253
Target Start/End: Original strand, 12873747 - 12873905
Alignment:
| Q |
95 |
tgtttctcaagactcccgatgtcaaagaatgggaaatacatttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacaca |
194 |
Q |
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| T |
12873747 |
tgtttctcaagactccagatggcaaaaaatgggaaatgtgcacgactaaaatcaatggggatatttggtttcaaaagggttggaaagaatttgctacata |
12873846 |
T |
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| Q |
195 |
ttattcattagatcatggtcacatggtgctgtttcaatatcagaaaacctctcattttg |
253 |
Q |
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| T |
12873847 |
ttattcactagatcatgggcacatggtattatttcaatatgaagaaaactctcattttg |
12873905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 36 - 320
Target Start/End: Original strand, 43750494 - 43750778
Alignment:
| Q |
36 |
actgcagagaattccaaatgctttcaccgagaaatatatcggtgatttatcaaagccaatgtttctcaagactcccgatgtcaaagaatgggaaatacat |
135 |
Q |
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|||||||| ||||||| |||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||| |||| |||||||| ||||| |
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| T |
43750494 |
actgcagaaaattccagatgctttcactaagaaatatagtggtgatttgtcaaacccaatgtttctcaagactccagatgacaaaaaatgggaagtacat |
43750593 |
T |
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| Q |
136 |
ttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacacattattcattagatcatggtcacatggtgctgtttcaatatc |
235 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||| |||||||||| |||||| || ||||||||||| |
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| T |
43750594 |
ttgactaaaaaggatggtgatatttggattcacaagggatggaatgaatttgctacacattattctatagatcatggacacatgctgatgtttcaatatg |
43750693 |
T |
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| Q |
236 |
agaaaacctctcattttgaggtttacatttttgacaagagtacttttgaaatcgaatatcgtgttgatggtaataatcaacatga |
320 |
Q |
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| T |
43750694 |
aaaaaacatctcattttaagatttacatatttaacaagagtactttggaaattgaatatcacgttgatggaaataatcaacatga |
43750778 |
T |
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