View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12470_low_8 (Length: 332)

Name: NF12470_low_8
Description: NF12470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12470_low_8
NF12470_low_8
[»] chr5 (12 HSPs)
chr5 (39-193)||(30747812-30747966)
chr5 (74-193)||(30481552-30481671)
chr5 (255-317)||(30340198-30340260)
chr5 (255-317)||(30481726-30481788)
chr5 (255-317)||(30748025-30748087)
chr5 (18-101)||(29870385-29870468)
chr5 (34-101)||(29851510-29851577)
chr5 (38-100)||(30244267-30244329)
chr5 (256-291)||(30714754-30714789)
chr5 (257-286)||(29870580-29870609)
chr5 (255-284)||(30244072-30244101)
chr5 (255-284)||(30434200-30434229)
[»] chr4 (1 HSPs)
chr4 (257-286)||(20298405-20298434)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 30747812 - 30747966
Alignment:
Q  39 atcaaaatcgcaatcctcgataccactaccggactcattgtcacttcctccactccaaaagacttcgtcttcgtgattgggtatgtttgttccattaatc 138  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  30747812 atcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtcattgggtatgtttgttccattaatc 30747911  T
Q  139 ccgttatttgtcttgtgtatcgaaggcaatcctaaccattcaattaaatccccac 193  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  30747912 ccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 30747966  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 30481552 - 30481671
Alignment:
Q  74 cattgtcacttcctccactccaaaagacttcgtcttcgtgattgggtatgtttgttccattaatcccgttatttgtcttgtgtatcgaaggcaatcctaa 173  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  30481552 cattgtcacttcctccactccaaaagactgcgtcttcgtcattgggtatgtttgttccattaatcccgttatttgtcttgtgtgtcgacgccaatcctaa 30481651  T
Q  174 ccattcaattaaatccccac 193  Q
    ||||||||||||||||||||    
T  30481652 ccattcaattaaatccccac 30481671  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 30340260 - 30340198
Alignment:
Q  255 ctatgatgaagaaaattacctgaattagaacacttgtaactttagttgagcagtgaaatatct 317  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 30340198  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 30481726 - 30481788
Alignment:
Q  255 ctatgatgaagaaaattacctgaattagaacacttgtaactttagttgagcagtgaaatatct 317  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 30481788  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 30748025 - 30748087
Alignment:
Q  255 ctatgatgaagaaaattacctgaattagaacacttgtaactttagttgagcagtgaaatatct 317  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatct 30748087  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29870385 - 29870468
Alignment:
Q  18 gctccgacccatgccatgacaatcaaaatcgcaatcctcgataccactaccggactcattgtcacttcctccactccaaaagac 101  Q
    |||| |||||| ||| | || |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  29870385 gctctgacccacgccctcactatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcctccactccaaaagac 29870468  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 29851510 - 29851577
Alignment:
Q  34 tgacaatcaaaatcgcaatcctcgataccactaccggactcattgtcacttcctccactccaaaagac 101  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||||    
T  29851510 tgactatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcctccactccaaaagac 29851577  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 30244329 - 30244267
Alignment:
Q  38 aatcaaaatcgcaatcctcgataccactaccggactcattgtcacttcctccactccaaaaga 100  Q
    |||||||||||||||||||||| |||| || |||||| ||||||| |||||||||||||||||    
T  30244329 aatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcctccactccaaaaga 30244267  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 30714789 - 30714754
Alignment:
Q  256 tatgatgaagaaaattacctgaattagaacacttgt 291  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30714789 tatgatgaagaaaattacctgaattagaacaattgt 30714754  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 29870580 - 29870609
Alignment:
Q  257 atgatgaagaaaattacctgaattagaaca 286  Q
    ||||||||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaaca 29870609  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 30244101 - 30244072
Alignment:
Q  255 ctatgatgaagaaaattacctgaattagaa 284  Q
    ||||||||||||||||||||||||||||||    
T  30244101 ctatgatgaagaaaattacctgaattagaa 30244072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 30434200 - 30434229
Alignment:
Q  255 ctatgatgaagaaaattacctgaattagaa 284  Q
    ||||||||||||||||||||||||||||||    
T  30434200 ctatgatgaagaaaattacctgaattagaa 30434229  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 20298434 - 20298405
Alignment:
Q  257 atgatgaagaaaattacctgaattagaaca 286  Q
    ||||||||||||||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaaca 20298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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