View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12471_high_1 (Length: 956)
Name: NF12471_high_1
Description: NF12471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12471_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 13465377 - 13465977
Alignment:
| Q |
1 |
aagctttggaaaggcttggtgctgattcattcttgctcatgaatgatcaacaacaattgcaggtaattaattaaagaagtattaccaattaaacaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13465377 |
aagctttggaaaggcttggtgctgattcattcttgctcatgaatgatcaacaacaattgcaggtaattaattaaagaagtattaccaattaaacaaggtt |
13465476 |
T |
|
| Q |
101 |
ccattttgagaaaataattttgttaaataatgaactacattaaggtctaagcatgtttctagccttcaaatacatggtttactgtttgaagttcctaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
13465477 |
ccattttgagaaaataattttgttaaataatgaactacattaaggtctaagcatgtttctagcatccaaatacatggtttactgtttgaagttcctaaca |
13465576 |
T |
|
| Q |
201 |
catattactatttcatatttaattattcttatatg-aaagaaagaaagnnnnnnnnncaaatgtcagctaattttttgcctta-ggtaccaacttttttc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||| |||||||||||||||| |
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| T |
13465577 |
catattactatttcatatttaattattcttatatgaaaagaaaaaaa--------aacaaatgtcagctaa--ttttgccttagggtaccaacttttttc |
13465666 |
T |
|
| Q |
299 |
atgggtatcaaatgattaatatttgg---------------------agaattatggtgacacatcgagattttggagatactacaaagcatctgtttgt |
377 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13465667 |
atgggtatcaaatgattaatgtttggtatcagagtagtatgtatgtcagaattacggtgatacatcgagattttggagatactacaaagcatctgtttgt |
13465766 |
T |
|
| Q |
378 |
ttctacattt-aacccacctaaacgttcagcaaattgaagttacaaaatttagcttctcacaaaacgtagctttgggatgcaagcctgggtattaaaccg |
476 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||||| || |
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|
| T |
13465767 |
ttctacatttaaacccatctaaacgttcagcaaattgaagctacaaaa-ttagcttctcacaaaacgtagctttgggacgcaagcgtggctattaaatcg |
13465865 |
T |
|
| Q |
477 |
tggatccaaacacccacaaagtgtag-ttttaaagaatcacaatagttcaccgtgattcttgtagcttctacaaaatcacggtatgtcatggtaattctg |
575 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
13465866 |
tggatccaaacacccacaaagtgtagtttttaaaaaatcacaatagatcaccgtgattcatgtagcttctacagaatcacgatatgtcatggtaattctg |
13465965 |
T |
|
| Q |
576 |
acatacccaccc |
587 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13465966 |
acatacccaccc |
13465977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 596 - 942
Target Start/End: Original strand, 13466041 - 13466387
Alignment:
| Q |
596 |
actaaagccctcgctttaggcctactaacaaaatattatttttcattatatttt-ataaattaaaagctctcatatgcatacaaaaaaggtctcatatat |
694 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||| || ||||| |
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|
| T |
13466041 |
actaaagccctcgctttaggccgactaacaaaatattatttttcattatatttttataaataaaaaggtctcatatgcgcgcaaaaaagc-cttgtatat |
13466139 |
T |
|
| Q |
695 |
cacaacttactttaggtctaacttactttttaagattattgggctgaccttatgtgaaacattcgttatccgtaggcaaaattaattcaacattaaatta |
794 |
Q |
| |
|
||||||||| || | ||| |||||||||||||||||||||| | ||| | ||| | |||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
13466140 |
cacaacttatttcacttctcacttactttttaagattattggatcgccct-acgtggagcattggttatccgtatgcaaaattaattcaacattaaatta |
13466238 |
T |
|
| Q |
795 |
ttggatattgagtatcatatcaacaaaattcttgagagtgctcacc--ttatataatcctttgatttaattgattagttagtattatagaccaattgttt |
892 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
13466239 |
ttggatattgagtatcatatcaacaaaattctagagagtgctcaccaagtatataatcctttgatttaattgattagttagtattatagacc-attgttt |
13466337 |
T |
|
| Q |
893 |
attttcttcttaggaagcaaaggacacaatggacggcatcatagacacag |
942 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13466338 |
gttttcatcttaggaagcaaaggacacaatggacggcatcatagacacag |
13466387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 596 - 738
Target Start/End: Original strand, 15889066 - 15889209
Alignment:
| Q |
596 |
actaaagccctcgctttaggcctactaacaaaa-tattatttttcattatattttataaattaaaagctctcatatgcatacaaaaaaggtctcatatat |
694 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||| ||||| |||||||||| | |||||||| ||||||| |
|
|
| T |
15889066 |
actaaagccctcgctttaggcctacaagcaaaaatattatttttcattaaattttatatgcgaaaaggcctcatatgcagataaaaaaggcctcatatgc |
15889165 |
T |
|
| Q |
695 |
cacaacttactttaggtctaacttactttttaagattattgggc |
738 |
Q |
| |
|
|| |||||| ||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
15889166 |
caaaacttatttttggtctaacttatttttgaagattattgggc |
15889209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 596 - 650
Target Start/End: Original strand, 34250638 - 34250692
Alignment:
| Q |
596 |
actaaagccctcgctttaggcctactaacaaaatattatttttcattatatttta |
650 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
34250638 |
actaaagccctcactttaggccgaataacaaaatattatttttcattagatttta |
34250692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 594 - 708
Target Start/End: Complemental strand, 39104170 - 39104057
Alignment:
| Q |
594 |
ctactaaagccctcgctttaggcctactaacaaaatattatttttcattatattttataaattaaaagctctcatatgcatacaaaaaaggtctcatata |
693 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||| ||||||| || ||||||||| | |||||| |
|
|
| T |
39104170 |
ctactaaagccctcgctttaggcctaccaacaaaa-aatatttttcattatattttataaacaaaaatgcctcatatacagacaaaaaagaccacatata |
39104072 |
T |
|
| Q |
694 |
tcacaacttacttta |
708 |
Q |
| |
|
| | ||||| ||||| |
|
|
| T |
39104071 |
ttaaaactttcttta |
39104057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 650
Target Start/End: Complemental strand, 10484384 - 10484333
Alignment:
| Q |
599 |
aaagccctcgctttaggcctactaacaaaatattatttttcattatatttta |
650 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
10484384 |
aaagccttcgttttaggcctcccaacaaaaaattatttttcattatatttta |
10484333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 642
Target Start/End: Complemental strand, 2021267 - 2021221
Alignment:
| Q |
596 |
actaaagccctcgctttaggcctactaacaaaatattatttttcatt |
642 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2021267 |
actaaagtcctcgctttaggcctacgaacaaaaatttatttttcatt |
2021221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 43200414 - 43200459
Alignment:
| Q |
609 |
ctttaggcctactaacaaaatattatttttcattatattttataaa |
654 |
Q |
| |
|
||||||| || | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
43200414 |
ctttaggtctcccaacaaaaaattatttttcattatattttataaa |
43200459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 610 - 735
Target Start/End: Original strand, 50994322 - 50994447
Alignment:
| Q |
610 |
tttaggcctactaacaaaata-ttatttttcattatattttataaattaaaagctctcatatgcatacaaaaaaggtctcatatatcacaacttacttta |
708 |
Q |
| |
|
|||||||||| ||| |||| | ||||||||||||| |||||||||| |||||| || ||||||| | ||||||| | |||||||||| || | |||| |
|
|
| T |
50994322 |
tttaggcctattaataaaagacttatttttcattaaattttataaa-taaaagatcatatatgcagataaaaaagatttcatatatcaaaattcgtttta |
50994420 |
T |
|
| Q |
709 |
ggtctaacttactttttaagattattg |
735 |
Q |
| |
|
|||||||||| |||||||| |||||| |
|
|
| T |
50994421 |
agtctaacttaatttttaaggttattg |
50994447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 664 - 736
Target Start/End: Complemental strand, 30484221 - 30484149
Alignment:
| Q |
664 |
ctcatatgcatacaaaaaaggtctcatatatcacaacttactttaggtctaacttactttttaagattattgg |
736 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| || || |||||||||| ||||| |||| ||||||||||| |
|
|
| T |
30484221 |
ctcatatgccgataaaaaaggactcatatatcaaaatttgctttaggtctgacttagttttaaagattattgg |
30484149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 653
Target Start/End: Complemental strand, 34304619 - 34304561
Alignment:
| Q |
596 |
actaaagccctcgctttaggcctactaacaaaa-tattatttttcattatattttataa |
653 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
34304619 |
actaaagccatcgctttaggcctaacaacaaaaatattatttttcattgaattttataa |
34304561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 653
Target Start/End: Complemental strand, 14693949 - 14693892
Alignment:
| Q |
596 |
actaaagccctcgctttaggcctactaacaaaatattatttttcattatattttataa |
653 |
Q |
| |
|
|||||||||||| |||||| |||| || |||| |||||||||||||| ||||||||| |
|
|
| T |
14693949 |
actaaagccctcactttagacctatcaataaaaaattatttttcattaaattttataa |
14693892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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