View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12471_high_2 (Length: 707)

Name: NF12471_high_2
Description: NF12471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12471_high_2
NF12471_high_2
[»] chr4 (1 HSPs)
chr4 (19-694)||(42042180-42042841)


Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 694
Target Start/End: Original strand, 42042180 - 42042841
Alignment:
Q  19 tgaggaatgtttgtcaattgatcaaatgaaattgcataacacttttaataaacaccacttaattattcactaacatatgcttatacataaatgcgcatgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42042180 tgaggaatgtttgtcaattgatcaaatgaaattgcataacacttttaataaaccccacttaattattcactaacatatgcttatacataaatgcgcatgc 42042279  T
Q  119 atatatatgtttgcttgttttggctttcatttcaaaccatgaaagtcaaaggtggcatgtgctagaaagtacttttgtcttctcatatatgaaaatcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||| ||    ||||||||||||||    
T  42042280 atatatatgtttgcttgttttggctttcatttcaaaccatgaaagtcaaaggtggcatgtgctagaaagt-----tgtcatcc---atatgaaaatcaaa 42042371  T
Q  219 ttctgtttctgtcaagtagcaagcatgttgtctagctctttcacatgtactacactcctagtcctctctttaatttctgtgaaaatgtgatgaaatgagc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||          |||    
T  42042372 ttctgtttctgtcaagtagcaagcatgttgtctagctctttcacatgtactacactcctagtcctctcttt-----ctgtgaaaatg----------agc 42042456  T
Q  319 ttgcttcaatgactatgagttgaaacactcatcatgattaatagtttatctgaaccagcacgcctaatcattttgtcatgtcattataa---------tg 409  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||         ||    
T  42042457 ttgcttcaatgactatgagttgaaacattcatcatgattaatagtttatctgaaccagcacgcctaatcattgtgtcatgccattataactacttgaatg 42042556  T
Q  410 gaactttggttcttgactcccccgacataggaacttcatttgtccttatcaaatgacacaaaaataagattttctcatccatgattggttgtttaattaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42042557 gaactttggttcttgactcccccgacataggaacttcatttgtccttatcaaatgacacaaaaataagattttctcatccatgattggttgtttaattaa 42042656  T
Q  510 gactttcttcaatagtatatatatgtatataaaccaatttaacatgtgaaaacacacgtcacttgttgacactttgaatgaatgcatctatttcttaatc 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42042657 gactttcttcaatagtatatatatgtatataaaccaatttaacatgtgaaaacacacgtcacttgttgacactttgaatgaacgcatctatttcttaatc 42042756  T
Q  610 ttcatgcaagtagtatatatatgtttactaagaggaagcaaagcatgcgttagctagacagaggaaaaattcttcatacacaggt 694  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42042757 ttcatgcaagtagtatatatatttttaccaagaggaagcaaagcatgcgttagctagacagaggaaaaattcttcatgcacaggt 42042841  T

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