View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12471_high_9 (Length: 246)

Name: NF12471_high_9
Description: NF12471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12471_high_9
NF12471_high_9
[»] chr6 (2 HSPs)
chr6 (19-216)||(5948282-5948495)
chr6 (21-103)||(395428-395510)
[»] chr4 (2 HSPs)
chr4 (136-210)||(20320225-20320296)
chr4 (136-168)||(20321255-20321287)
[»] chr8 (1 HSPs)
chr8 (136-181)||(10161392-10161437)
[»] chr7 (1 HSPs)
chr7 (136-181)||(11019881-11019926)
[»] chr1 (3 HSPs)
chr1 (136-181)||(15550446-15550491)
chr1 (136-181)||(27054299-27054344)
chr1 (136-181)||(46602821-46602866)
[»] chr5 (2 HSPs)
chr5 (136-181)||(16438503-16438548)
chr5 (136-181)||(40796053-40796098)
[»] chr2 (1 HSPs)
chr2 (140-216)||(30777194-30777262)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 5948282 - 5948495
Alignment:
Q  19 attattcagccactgtctattcggaagcgaaacaaagtttcaccaatgctgaagtcagtgagtgtgttagtgttgatgataagtcctctgagagcgcga- 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  5948282 attattcagccactgtctattcggaagcgaaacaaagtttcaccaatgctgaagtcagtgagtgtgttagtgttgatgataagtcctgtgagagcgcgat 5948381  T
Q  118 -------nnnnnnnnnnnnnnctatccctgtttcccaaaacaattccacttttgaccccatatgaga--------attagagaattaatgacataaatga 202  Q
                         || |||| |||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||    
T  5948382 tttttttttttttttttttttctgtcccagtttcccaaaacaattccacttttgaccccatataagaattagattattagagaattaatgacataaatga 5948481  T
Q  203 tccacttttacatt 216  Q
    ||||||||||||||    
T  5948482 tccacttttacatt 5948495  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 395428 - 395510
Alignment:
Q  21 tattcagccactgtctattcggaagcgaaacaaagtttcaccaatgctgaagtcagtgagtgtgttagtgttgatgataagtc 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  395428 tattcagccactgtctattcggaagcgaaacaaagtttcaccgatactgaagtcagtgagtgtgtcagtgttgatgataagtc 395510  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 20320225 - 20320296
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaattagagaattaatgacataaatgatccacttt 210  Q
    |||| ||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||| |||||||    
T  20320225 ccctatttcccaaaacaactccacttttgaccccatatgaga---agagaattaatgacataaatgacccacttt 20320296  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 20321287 - 20321255
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccc 168  Q
    |||||||||||||||||| ||||||||||||||    
T  20321287 ccctgtttcccaaaacaactccacttttgaccc 20321255  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 10161392 - 10161437
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  10161392 ccctgtttcccaaatcaattccacttttgaccccatatgagaatta 10161437  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 11019881 - 11019926
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  11019881 ccctgtttcccaaatcaattccacttttgaccccatatgagaatta 11019926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 15550446 - 15550491
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  15550446 ccctgtttcccaaaacaattccatttttgaccccatatgagaatta 15550491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27054299 - 27054344
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27054299 ccctgattcccaaaacaattccacttttgaccccatatgagaatta 27054344  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 46602866 - 46602821
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  46602866 ccctgtttctcaaatcaattccactttagaccccatatgagaatta 46602821  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 16438548 - 16438503
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||    
T  16438548 ccctgtttcctaaatcaattccatttttgaccccatatgagaatta 16438503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 40796053 - 40796098
Alignment:
Q  136 ccctgtttcccaaaacaattccacttttgaccccatatgagaatta 181  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||    
T  40796053 ccctgtttcccaaattaattccacttttgacctcatatgaaaatta 40796098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 30777194 - 30777262
Alignment:
Q  140 gtttcccaaaacaattccacttttgaccccatatgagaattagagaattaatgacataaatgatccacttttacatt 216  Q
    |||||||| ||||||||||||||||||| | |||||||        ||||||||||||||||||||||||| |||||    
T  30777194 gtttcccagaacaattccacttttgacctcctatgaga--------attaatgacataaatgatccactttcacatt 30777262  T

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