View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12471_low_4 (Length: 536)
Name: NF12471_low_4
Description: NF12471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12471_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 529
Target Start/End: Original strand, 40383259 - 40383771
Alignment:
| Q |
17 |
aacattgcctccttcttctgctttatagcccccgtgtaagtattttaaaatatttaaatccatacgttgattaacatatattgtatatgnnnnnnngtac |
116 |
Q |
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| T |
40383259 |
aacattgcctccttcttctgctttatagcccccgtgtaagtattttaaaatatttaaacccatacgttgattaacatatattatatatgtttttttgtac |
40383358 |
T |
|
| Q |
117 |
ataacaatgattaatattcaaataaacacatatatgtatgctttgcaggtcaatattttatcaagtttgtaagaagaaaacaacaggaggtttccaatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383359 |
ataacaatgattaatattcaaataaacacatatatgtatgctttgcaggtcaatattttatcaagtttgtaagaagaaaacaacaggaggtttccaatct |
40383458 |
T |
|
| Q |
217 |
gctccatatgtggctgcactcttcagtgcaatgctttggatattttatgcttacataaaaacgggtgaaatgcttatcatcaccatcaatgcatttggtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383459 |
gctccatatgtggctgcactcttcagtgcaatgctttggatattttatgcttacataaaaacgggtgaaatgcttatcatcaccatcaatgcatttggtt |
40383558 |
T |
|
| Q |
317 |
gtgtgatagaaacaatttacctcgtcatctataccacttactgctccaagaaagctagggtatgtaatatatgtgtgtgtatataatataccatactact |
416 |
Q |
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| T |
40383559 |
gtgtgatagaaacaatttacctagtcatctataccacttactgctccaagaaagctagggtatgtaatatatatgtgtgtatataatataccatactact |
40383658 |
T |
|
| Q |
417 |
aaacaaattatggtattgaatatgttattggatttgcagatcttcacattgaagctgattgggttgtttaatttgggaggaatttgcttggtgattattc |
516 |
Q |
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| T |
40383659 |
aaacaaattatggtattgaatatgttattggatttgcagatcttcacattgaagctgattgggttgtttaatttgggaggaatttgcttggtgattattc |
40383758 |
T |
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| Q |
517 |
taacacaggttct |
529 |
Q |
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| T |
40383759 |
taacacatgttct |
40383771 |
T |
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Back To:
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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 158 - 340
Target Start/End: Original strand, 45310156 - 45310338
Alignment:
| Q |
158 |
tttgcaggtcaatattttatcaagtttgtaagaagaaaacaacaggaggtttccaatctgctccatatgtggctgcactcttcagtgcaatgctttggat |
257 |
Q |
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||||||| ||| |||||||| | |||||||||||||| |||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||| |
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| T |
45310156 |
tttgcagaccaacattttatcgaatttgtaagaagaaatcaacagaaggtttccaatcaattccatatgtggctgcactatttagtgcaatgctttggat |
45310255 |
T |
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| Q |
258 |
attttatgcttacataaaaacgggtgaaatgcttatcatcaccatcaatgcatttggttgtgtgatagaaacaatttacctcg |
340 |
Q |
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| T |
45310256 |
gttttatgcctataccaagaagggtgaaactcttcttatcaccatcaatgcattcggttgtgtgatagagacaatttacctcg |
45310338 |
T |
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