View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12471_low_6 (Length: 383)
Name: NF12471_low_6
Description: NF12471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12471_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 34776478 - 34776835
Alignment:
| Q |
1 |
actgcacacaccggatacaatattgacaatgacacagacaccagaattaaatttagtcaatgaaattgtttcaatttattaacatgtgtccatgttgaga |
100 |
Q |
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| T |
34776478 |
actgcacacaccggacacaatattgacaatgacacagacaccagaattaaatttagtcaatgaaattgtttcaatttattaacatgtgtccgtgttgaga |
34776577 |
T |
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| Q |
101 |
taatgttagacattaaaatgtgtaggatacattaccttcaatctgaagtgtctgtgttacataacttttgctaataaggataaaatggtagtaactagta |
200 |
Q |
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| T |
34776578 |
taatgttagacattaaaatgtgtaggatacattactttcaatccgaagtgtctctgctacataacttttgctaataaggataaaatggtagtaactagta |
34776677 |
T |
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| Q |
201 |
acaaattaagatgcatattttggattaaccaaataagtaaattaaatgtcaattgtcttttatcacagtgggttctgcatgattggaatgatgaacaatc |
300 |
Q |
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| T |
34776678 |
ataaatta------atattttggattaaccaaataactaaattaaatgtcaattgtcttttatcatagtgggttctgcatgattggaatgatgaacaatc |
34776771 |
T |
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| Q |
301 |
cttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
364 |
Q |
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| T |
34776772 |
cttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
34776835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 34784904 - 34785001
Alignment:
| Q |
267 |
agtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
364 |
Q |
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| T |
34784904 |
agtgggttttgcatgactggaatgatgaattatccttaaagatattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgatt |
34785001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 11467576 - 11467502
Alignment:
| Q |
263 |
tcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttca |
337 |
Q |
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| T |
11467576 |
tcacagtgggttttgcatgattgggatgatgaactctccttaaagatattgaataacagcaaagaagctatttca |
11467502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 11524297 - 11524371
Alignment:
| Q |
263 |
tcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttca |
337 |
Q |
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| T |
11524297 |
tcacagtgggttctgcatgattgggatgatgaactctccctaaggatattgaagaactgcaaagaagctatttca |
11524371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 11508085 - 11508156
Alignment:
| Q |
266 |
cagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttca |
337 |
Q |
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| T |
11508085 |
cagtggattctgcatgattggaatgatgatctctctttaaagatattgaagaactgcaaaacagctatttca |
11508156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 11548426 - 11548498
Alignment:
| Q |
265 |
acagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttca |
337 |
Q |
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| T |
11548426 |
acagtggattttgcatgattggaatgatgaattgtccttaaagatattggagaattgcaaaaaagctatttca |
11548498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 11444682 - 11444610
Alignment:
| Q |
265 |
acagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttca |
337 |
Q |
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| T |
11444682 |
acagtggattttgcatgattggaatgacgaattgtccttaaagatattagagaattgcaaaaaagctatttca |
11444610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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