View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12471_low_8 (Length: 339)
Name: NF12471_low_8
Description: NF12471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12471_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 4586983 - 4586669
Alignment:
| Q |
1 |
acaaaaaagaatcggacatgtcacacttcacacatgatgctttcactagcttgggcattgagtgttgaaccgctacttaatttggtaagtgattaatgga |
100 |
Q |
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| T |
4586983 |
acaaaaaagaatcggacatgtcacacttcacacatgatgctttcactagcttgggcattgagtgttgaaccgctacttaatttggtaagtgattaatgga |
4586884 |
T |
|
| Q |
101 |
tatttcttcaaatatgtaagaatagtagggcatttgatcaaaatttggaagcgttacggacgtgaaacgacatttcaagttaatgaatctttacaaaagt |
200 |
Q |
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| T |
4586883 |
tatttcttcaaatatgtaagaatagtagggcatttgatcaaaatttggaaacgttacagacgtga-----cgtttcaagttaatgaatatttacaaaaat |
4586789 |
T |
|
| Q |
201 |
acacgactacatcgagatttgatacttcagttgaagctatagcaacataattgatctcacagttaacattaacactacttaacgaaaacactaaatatag |
300 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586788 |
acacgactacatcaagatttgatacttcggttgaagctatagcaacttaattgatctcgcagttaacattaacactacttaacgaaaacactaaatatag |
4586689 |
T |
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| Q |
301 |
tttgaggtagttggcagaag |
320 |
Q |
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|||||||||||| ||||||| |
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| T |
4586688 |
tttgaggtagttagcagaag |
4586669 |
T |
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