View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12472_high_2 (Length: 417)

Name: NF12472_high_2
Description: NF12472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12472_high_2
NF12472_high_2
[»] chr8 (11 HSPs)
chr8 (2-396)||(29013373-29013767)
chr8 (26-183)||(16937115-16937272)
chr8 (130-230)||(5989898-5989998)
chr8 (26-183)||(12243992-12244149)
chr8 (136-183)||(18190627-18190674)
chr8 (136-183)||(27534188-27534235)
chr8 (146-183)||(11298538-11298575)
chr8 (130-183)||(13575985-13576038)
chr8 (130-183)||(16809148-16809201)
chr8 (146-183)||(30026658-30026695)
chr8 (130-183)||(37720125-37720178)
[»] chr3 (8 HSPs)
chr3 (271-361)||(50321553-50321645)
chr3 (26-183)||(40797214-40797371)
chr3 (77-183)||(21084514-21084620)
chr3 (119-177)||(50460464-50460522)
chr3 (146-183)||(3457238-3457275)
chr3 (26-183)||(4019779-4019936)
chr3 (136-181)||(37051885-37051930)
chr3 (135-183)||(105823-105871)
[»] chr6 (7 HSPs)
chr6 (26-230)||(20496374-20496578)
chr6 (136-183)||(34020894-34020941)
chr6 (149-183)||(32804599-32804633)
chr6 (146-183)||(4660744-4660781)
chr6 (130-183)||(12654086-12654139)
chr6 (146-183)||(31705481-31705518)
chr6 (147-183)||(33541307-33541343)
[»] chr4 (8 HSPs)
chr4 (35-183)||(14346621-14346769)
chr4 (136-183)||(50981490-50981537)
chr4 (26-100)||(15729840-15729914)
chr4 (136-230)||(33020656-33020750)
chr4 (136-183)||(35658307-35658354)
chr4 (130-183)||(6082207-6082260)
chr4 (146-183)||(9255079-9255116)
chr4 (146-183)||(11210081-11210118)
[»] chr1 (11 HSPs)
chr1 (75-183)||(32878938-32879046)
chr1 (136-183)||(34566972-34567019)
chr1 (146-183)||(4882144-4882181)
chr1 (137-182)||(13152732-13152777)
chr1 (146-183)||(20413099-20413136)
chr1 (127-228)||(23791276-23791377)
chr1 (130-183)||(26771391-26771444)
chr1 (22-59)||(27356653-27356690)
chr1 (26-183)||(34659417-34659574)
chr1 (26-183)||(44513778-44513935)
chr1 (6-46)||(22415305-22415345)
[»] scaffold0009 (1 HSPs)
scaffold0009 (136-183)||(105331-105378)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-114)||(344811-344902)
[»] chr5 (7 HSPs)
chr5 (136-183)||(40564933-40564980)
chr5 (26-183)||(18472502-18472659)
chr5 (5-60)||(8957366-8957421)
chr5 (136-183)||(20145995-20146042)
chr5 (130-183)||(11734613-11734666)
chr5 (26-183)||(33486345-33486502)
chr5 (26-183)||(41554668-41554825)
[»] chr2 (10 HSPs)
chr2 (136-183)||(35353931-35353978)
chr2 (114-183)||(15786343-15786412)
chr2 (26-183)||(37883834-37883991)
chr2 (136-183)||(2251123-2251170)
chr2 (136-183)||(3397755-3397802)
chr2 (130-183)||(11798305-11798358)
chr2 (130-183)||(15920159-15920212)
chr2 (24-60)||(3397878-3397914)
chr2 (5-61)||(5071268-5071324)
chr2 (1-45)||(45040977-45041021)
[»] chr7 (11 HSPs)
chr7 (26-100)||(39090269-39090343)
chr7 (135-230)||(4621101-4621196)
chr7 (136-183)||(21552231-21552278)
chr7 (136-183)||(29804455-29804502)
chr7 (136-183)||(32741049-32741096)
chr7 (136-183)||(37375823-37375870)
chr7 (136-179)||(45949459-45949502)
chr7 (136-183)||(46025823-46025870)
chr7 (26-183)||(5024832-5024989)
chr7 (130-183)||(32312852-32312905)
chr7 (130-183)||(38273189-38273242)
[»] scaffold0999 (1 HSPs)
scaffold0999 (137-182)||(1996-2041)
[»] scaffold1294 (1 HSPs)
scaffold1294 (130-183)||(1060-1113)


Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 29013767 - 29013373
Alignment:
Q  2 ttgcttttctatcttgttacgatgtttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaa-tgtt 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29013767 ttgcttttctgtcttgttacaatgtttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaaatgtt 29013668  T
Q  101 agagatctggagtcaagggtattctaaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataactatagtgaat 200  Q
    |||||  |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29013667 agagacatggagtcatgggtattctcaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataaatttagtgaat 29013568  T
Q  201 ttgtagccagattcatcgtttttgtttttacaaaattcatatttgttgtcgattctcacagagtcaccccaataattggatgtgtggggtaaatcaatag 300  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  29013567 ttgtagcc-gattcatcgtttttgtttttagaaaattcatatttgttgtgaattcttacagagtcacaccaataattggatgtgtggggtaaatcaatag 29013469  T
Q  301 caaccaaaccaaaaggaacacaataataatcacgaataaaacaaatcagcaatacgaaggagtagggacagggaagaaaaacacataatattgttt 396  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  29013468 caaccgaaccaaaaggaacacaataataatcacgaataaaacaaatcagcaatacgaaggagtaaggacaaggaagaaaaacacataatattgttt 29013373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 16937272 - 16937115
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    |||||| |||||||||||||| |||| ||||||||   |||| | ||| ||||||| ||||| || ||||| |||  |||||| ||| || ||||||||     
T  16937272 tttgtttagttcagattgtcagatcagcttcgatccagtgcatatcaaatcaatgactttggagtcgtcaacgttgcagatctagagacatgggtattcc 16937173  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  ||||||||  || |||||||||  ||||||||||||||||||||||||    
T  16937172 ggagacttaaatatagtcatatgtgtaggctttagtactttgttgttttatgctatta 16937115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 5989898 - 5989998
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataactatagtgaatttgtagccagattcatcgtttttgttttt 229  Q
    ||||| ||||||||  || ||||||||| |||||||||| ||||||||||||||  || | ||| |||| |||||   |||||||||| |||||||||||    
T  5989898 acttgaatatagtcatatgtgtaggcttttgtactttgtcgttttatgctattaacatgaatattgtgagtttgttcgcagattcatcatttttgttttt 5989997  T
Q  230 a 230  Q
    |    
T  5989998 a 5989998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 12244149 - 12243992
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    |||||||  ||||||||||||||||| ||| ||||  ||||| | | | ||||||| |||| ||| |||||||||  || || ||||  | ||||||||     
T  12244149 tttgttcgattcagattgtcatatcagctttgatccaatgcagatccaatcaatgactttgatgtcgtcaatgttgcagttccggagatatgggtattcc 12244050  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    | | ||||| |||||||   || ||||||||| |||||||||| |||||||| |||||    
T  12244049 agagacttgaatatagttatatgtgtaggcttttgtactttgtcgttttatgttatta 12243992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 18190674 - 18190627
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||||| |||||||||| ||||||||||||||    
T  18190674 atatagtcatatttgtaggcttgtgtactttgtcgttttatgctatta 18190627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 27534235 - 27534188
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||  ||||||||||||||    
T  27534235 atatagtcatatttgtaggcttatgtactttgccgttttatgctatta 27534188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11298575 - 11298538
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  11298575 atttgtagtattatgtactttgttgttttatgctatta 11298538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 13576038 - 13575985
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||| |||| || || ||| |||||||||||||||||||||||    
T  13576038 acttgaatatagtcgtatttttaagcatatatactttgttgttttatgctatta 13575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 16809148 - 16809201
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  || ||||||||| ||||||||||||||||||| |||||    
T  16809148 acttgaatatagtcatatgtgtaggcttctgtactttgttgttttatgttatta 16809201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 30026695 - 30026658
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  30026695 atttgtaggcatatatactttgttgttttatgctatta 30026658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 37720125 - 37720178
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  || ||||||||| |||||||||| ||||||||||||||    
T  37720125 acttgaatatagtcatatgtgtaggcttttgtactttgtcgttttatgctatta 37720178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 50321645 - 50321553
Alignment:
Q  271 aataattggatgtgtggggtaaatcaatagcaaccaaacc--aaaaggaacacaataataatcacgaataaaacaaatcagcaatacgaagga 361  Q
    |||||||  |||||||| | ||||||||||||||||||||  ||||| ||||||||||||||||||||  ||| ||| || ||||| ||||||    
T  50321645 aataatttaatgtgtggagcaaatcaatagcaaccaaaccaaaaaagaaacacaataataatcacgaactaaataaaacaacaataagaagga 50321553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 40797214 - 40797371
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    |||||||  |||||||||||| |||| |||||||||  |||| | ||| ||||||| ||||| ||  ||||  ||  ||||| |||| |||||||||||     
T  40797214 tttgttcgattcagattgtcagatcagcttcgatctagtgcagatcaaatcaatgactttggagtcatcaacattgtagatccggagacaagggtattcc 40797313  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  ||||||||  || |||||||||  ||||||||| ||||||||||||||    
T  40797314 ggagacttaaatatagtcatatgtgtaggctttagtactttgtcgttttatgctatta 40797371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 21084620 - 21084514
Alignment:
Q  77 aatgattttggtgtggtcaatgttagagatctggagtcaagggtattctaaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttat 176  Q
    ||||| |||||||| |||||  ||  ||||||||||  | |||||||||||| || || ||||||||  || || ||||||| ||| ||||| |||||||    
T  21084620 aatgaatttggtgtcgtcaacattgcagatctggagatatgggtattctaaagacctgaatatagtcatatatgcaggcttaagtattttgtcgttttat 21084521  T
Q  177 gctatta 183  Q
    |||||||    
T  21084520 gctatta 21084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 50460464 - 50460522
Alignment:
Q  119 gtattctaaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatg 177  Q
    |||||| ||| ||||| ||||||||  || ||||||||| |||||||||||||||||||    
T  50460464 gtattccaaagacttgaatatagtcatatgtgtaggcttttgtactttgttgttttatg 50460522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 3457238 - 3457275
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  3457238 atttgtaggcatatgtactttgtcgttttatgctatta 3457275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 4019779 - 4019936
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    ||||||| ||||||||||||| |||| ||| ||||   |||| | | | ||||||| ||||| || ||||| |||  ||||| |||| || | |||||||    
T  4019779 tttgttcggttcagattgtcagatcagcttagatccagtgcagatccaatcaatgactttggcgtcgtcaacgttgcagatccggaggcatgagtattct 4019878  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||| |||||||    | | |||||||||||||||||| ||||||||||||||    
T  4019879 ggagacttgaatatagtaatctgtataggcttatgtactttgtcgttttatgctatta 4019936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 37051885 - 37051930
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctat 181  Q
    ||||||||  ||||||||||||||||||||||  ||||||||||||    
T  37051885 atatagtcatatttgtaggcttatgtactttgccgttttatgctat 37051930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 105871 - 105823
Alignment:
Q  135 tatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||  |||||||||| || ||||||||| ||||||||||||||    
T  105871 tatatagtcatatttgtaggcataggtactttgtcgttttatgctatta 105823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 20496374 - 20496578
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    ||||||| ||||||||||||| |||| ||| ||||   |||||| | | ||||||| |||||||| ||||| |||  | |||| |||  | ||||||||     
T  20496374 tttgttcggttcagattgtcagatcagcttagatccagtgcaaatccaatcaatgactttggtgtcgtcaacgttgcatatcttgagagatgggtattcc 20496473  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataactatagtgaatttgtagccagattcatcgtttttgt 225  Q
      | ||||| ||||||||  || ||||||||| |||||||||  |||||||||||||| |||   | | |||| |||||   |||||||||| |||||||    
T  20496474 ggagacttgaatatagtcatatgtgtaggcttttgtactttgccgttttatgctattaatatggatgttgtgagtttgttcgcagattcatcctttttgt 20496573  T
Q  226 tttta 230  Q
    |||||    
T  20496574 tttta 20496578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 34020894 - 34020941
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  34020894 atatagtcatatttgtaggcttatgtactttgtcgttttatgctatta 34020941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 32804599 - 32804633
Alignment:
Q  149 tgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||| |||||||||||||||||||||||||    
T  32804599 tgtaggcttttgtactttgttgttttatgctatta 32804633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 4660744 - 4660781
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  4660744 atttgtaggcatatgtactttgtcgttttatgctatta 4660781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 12654139 - 12654086
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  |||||||||| |||||| ||||| ||||||||||||||    
T  12654139 acttgaatatagtcatatttgtaggcatatgtattttgtcgttttatgctatta 12654086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 31705481 - 31705518
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| || ||||||||||||||||||||||||    
T  31705481 atttgtaggcataggtactttgttgttttatgctatta 31705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 33541343 - 33541307
Alignment:
Q  147 tttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||||||||||||||| |||| |||||||||    
T  33541343 tttgtaggcttatgtactttgtcgtttcatgctatta 33541307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 14346621 - 14346769
Alignment:
Q  35 ttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattctaaacacttg 134  Q
    |||||||||||| |||| ||||||||   |||||| ||| ||||||| ||||| || ||||| |||  ||||| |||| || | |||||||| | ||||     
T  14346621 ttcagattgtcagatcagcttcgatccagtgcaaatcaaatcaatgactttggagtcgtcaacgttgcagatccggagccatgtgtattctagagactta 14346720  T
Q  135 tatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
     ||||||||  || |||||||||  ||||||||  ||||||||||||||    
T  14346721 aatatagtcatatgtgtaggctttagtactttgccgttttatgctatta 14346769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 50981537 - 50981490
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||||||||||||||||||||||||| |||||    
T  50981537 atatagtcatatttgtaggcttatgtactttgttgttttatgatatta 50981490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 15729914 - 15729840
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgtt 100  Q
    ||||||||||||||||||||| |||| ||||||||   |||| | ||| ||||||||||||| || |||||||||    
T  15729914 tttgttcagttcagattgtcagatcaacttcgatccagtgcagatcaaatcaatgattttggagtcgtcaatgtt 15729840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 33020750 - 33020656
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataactatagtgaatttgtagccagattcatcgtttttgttttta 230  Q
    ||||||||  |||||||||||||||||||||||  |||||||||||||  ||   | | ||||||||||   |||||||||| ||||||||||||    
T  33020750 atatagtcatatttgtaggcttatgtactttgtcattttatgctattaacatggatgtcgtgaatttgttaacagattcatcctttttgttttta 33020656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 35658354 - 35658307
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||  |||||||||||||||||||||||||||||    
T  35658354 atatagtcatatttgtaaacttatgtactttgttgttttatgctatta 35658307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 6082260 - 6082207
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  |||||||||| |||||||||||  ||||||||||||||    
T  6082260 acttgaatatagtcatatttgtaggcatatgtactttgccgttttatgctatta 6082207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 9255116 - 9255079
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  9255116 atttgtaggcatatgtactatgttgttttatgctatta 9255079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11210118 - 11210081
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  11210118 atttgtaggcatatgtactttgtcgttttatgctatta 11210081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 32878938 - 32879046
Alignment:
Q  75 tcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattctaaacacttgtatatagtcgaatttgtaggcttatgtactttgttgtttt 174  Q
    ||||||| |||||||| ||||| |||  ||||| |||| || | ||||||  || ||||| ||||||||  |||||||||| || ||||||||| |||||    
T  32878938 tcaatgactttggtgtcgtcaacgttgtagatccggagacatgagtattccgaaaacttgaatatagtcatatttgtaggcataagtactttgtcgtttt 32879037  T
Q  175 atgctatta 183  Q
    |||||||||    
T  32879038 atgctatta 32879046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 34566972 - 34567019
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||  ||||||||||||||    
T  34566972 atatagtcatatttgtaggcttatgtactttgccgttttatgctatta 34567019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 4882181 - 4882144
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  4882181 atttgtaggcatatgtactttgctgttttatgctatta 4882144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 13152732 - 13152777
Alignment:
Q  137 tatagtcgaatttgtaggcttatgtactttgttgttttatgctatt 182  Q
    |||||||| |||||||||| |||||||||||  |||||||||||||    
T  13152732 tatagtcgtatttgtaggcatatgtactttgccgttttatgctatt 13152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 20413099 - 20413136
Alignment:
Q  146 atttgtaggcttatgtactttgttgttttatgctatta 183  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  20413099 atttgtaggcatatgtactttgtcgttttatgctatta 20413136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 23791276 - 23791377
Alignment:
Q  127 aacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataactatagtgaatttgtagccagattcatcgtttttgtt 226  Q
    |||||||| ||||||||  ||||||| | |||||| |||||||||||||| ||||||  |||| | | |||| |||||   || ||||||| ||||||||    
T  23791276 aacacttgaatatagtcatatttgtaagtttatgtgctttgttgttttatactattaacataaatgttgtgagtttgttctcatattcatcatttttgtt 23791375  T
Q  227 tt 228  Q
    ||    
T  23791376 tt 23791377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 26771391 - 26771444
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  || ||||||||| |||||||||| ||||||||||||||    
T  26771391 acttgaatatagtcatatgtgtaggcttttgtactttgtcgttttatgctatta 26771444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 27356690 - 27356653
Alignment:
Q  22 gatgtttgttcagttcagattgtcatatcatcttcgat 59  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  27356690 gatgtttgttcagttcagattgtcaaatcagcttcgat 27356653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 34659574 - 34659417
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    ||||||| |||||||||||||||||| ||| ||||  ||||| | | | ||||||| ||||| || |||||  ||  ||||| ||||  | ||||||||     
T  34659574 tttgttcggttcagattgtcatatcagcttagatccaatgcagatccaatcaatgactttggcgtcgtcaacattgcagatccggagatatgggtattcc 34659475  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||| ||||| ||||||||  |  ||||||||| | |||||||   |||||||||||||    
T  34659474 aaagacttgaatatagtcataagtgtaggcttttttactttgccattttatgctatta 34659417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 44513935 - 44513778
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    |||||||  |||||||||||| |||| ||||||||   |||| | ||| ||||||| ||||| || ||||| |||  ||||| |||| || ||||||||     
T  44513935 tttgttcgattcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatccggagacatgggtattcc 44513836  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  ||||||||  || |||||||||  |||||||| ||||||||| |||||    
T  44513835 ggagacttaaatatagtcatatgtgtaggctttagtactttgctgttttatgttatta 44513778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 22415345 - 22415305
Alignment:
Q  6 ttttctatcttgttacgatgtttgttcagttcagattgtca 46  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  22415345 ttttccatcttgttacgatgtttgttcaatttagattgtca 22415305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 105331 - 105378
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||||    
T  105331 atatagtcatatttgtaggcttatatactttgttgttttatgctatta 105378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 344811 - 344902
Alignment:
Q  23 atgtttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtc 114  Q
    ||||||||||||||||||||||||||||| ||||||| | || |||| | | ||||| |  ||||| ||||||| |||| | ||||||||||    
T  344811 atgtttgttcagttcagattgtcatatcaacttcgatataatccaaatcgaatcaattacattggtatggtcaacgttacatatctggagtc 344902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 40564980 - 40564933
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  40564980 atatagtcatatttgtaggcttatgtactttgtcgttttatgctatta 40564933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 18472659 - 18472502
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    |||||||  |||||||||||| |||| ||||||||   |||| | ||| ||||||| ||||  || ||||| |||  |||||||||| || | ||||||     
T  18472659 tttgttcgattcagattgtcagatcaacttcgatccagtgcagatcaaatcaatgactttgtagtcgtcaacgttgtagatctggagacatgagtattcc 18472560  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  ||||||||  || |||||||||  ||||||||||||||||||||||||    
T  18472559 ggagacttacatatagtcatatgtgtaggctttagtactttgttgttttatgctatta 18472502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 8957366 - 8957421
Alignment:
Q  5 cttttctatcttgttacgatgtttgttcagttcagattgtcatatcatcttcgatc 60  Q
    ||||||| |||||||  | ||||||||||||||||||||||| |||| ||||||||    
T  8957366 cttttctctcttgttcaggtgtttgttcagttcagattgtcagatcagcttcgatc 8957421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 20146042 - 20145995
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||||||||||||||||  |||||||||||||    
T  20146042 atatagtcatatttgtaggcttatgtactttgtcattttatgctatta 20145995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 11734666 - 11734613
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  |||||||||| |||||||||||  ||||||||||||||    
T  11734666 acttgaatatagtcatatttgtaggcatatgtactttgccgttttatgctatta 11734613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 33486502 - 33486345
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    ||||||| ||||||||||||| |||| ||||||||   |||| | |||  |||||| ||||| || ||||| |||  ||||| |||| || |||||||||    
T  33486502 tttgttcggttcagattgtcaaatcagcttcgatccagtgcagatcaaaccaatgactttggagtcgtcaacgttgcagatccggaggcatgggtattct 33486403  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  |||| |||  || |||||||||  ||||||||  ||||||||||||||    
T  33486402 ggagacttaaatatggtcatatgtgtaggctttagtactttgccgttttatgctatta 33486345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 41554668 - 41554825
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    ||||||| ||||||||||||| |||| ||||||||   |||| | ||| ||||||| |||||  | ||||| |||  ||||| |||| || ||||||||     
T  41554668 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggaatcgtcaacgttgcagatccggagacatgggtattcc 41554767  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  ||||||||  || |||||||||  ||||||||  ||||||||||||||    
T  41554768 ggagacttaaatatagtcatatgtgtaggctttagtactttgccgttttatgctatta 41554825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 35353931 - 35353978
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  35353931 atatagtcatatttataggcttatgtactttgttgttttatgctatta 35353978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 15786412 - 15786343
Alignment:
Q  114 caagggtattctaaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||||||| | ||||| ||||||||  ||||||| ||| |||||||||| |||||||||| ||||    
T  15786412 caagggtattctagatacttgaatatagtcttatttgtaagctcatgtactttgatgttttatgccatta 15786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 37883834 - 37883991
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    |||||||  ||||||||||||||||| ||| ||||  ||||| | ||| ||||||| ||||| || ||||| |||  ||||  |||| || | |||||||    
T  37883834 tttgttcgattcagattgtcatatcagctttgatccaatgcagatcaaatcaatgactttggagtcgtcaacgttgcagatacggagacatgagtattct 37883933  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    | | ||||  ||||||||  || |||||||||  ||||||||  ||||||||||||||    
T  37883934 agatacttaaatatagtcatatgtgtaggctttagtactttgccgttttatgctatta 37883991  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 2251170 - 2251123
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||  ||||||||||||||    
T  2251170 atatagtcatatttgtaggcttatgtactttgcagttttatgctatta 2251123  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 3397802 - 3397755
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||| ||||||||||||||| ||||||||||||||    
T  3397802 atatagtcatatttgtatgcttatgtactttgtcgttttatgctatta 3397755  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 11798358 - 11798305
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  |||||||||| || ||||||||| ||||||||||||||    
T  11798358 acttgaatatagtcatatttgtaggcataggtactttgtcgttttatgctatta 11798305  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 15920159 - 15920212
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  |||||||||| |||||||||||  ||||||||||||||    
T  15920159 acttgaatatagtcatatttgtaggcatatgtactttgccgttttatgctatta 15920212  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 3397914 - 3397878
Alignment:
Q  24 tgtttgttcagttcagattgtcatatcatcttcgatc 60  Q
    |||||||||| |||||||||||| |||||||||||||    
T  3397914 tgtttgttcaattcagattgtcagatcatcttcgatc 3397878  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 5071324 - 5071268
Alignment:
Q  5 cttttctatcttgttacgatgtttgttcagttcagattgtcatatcatcttcgatct 61  Q
    ||||||| |||||||  | ||||||||| ||||||||||||| |||| |||||||||    
T  5071324 cttttctctcttgttcaggtgtttgttcggttcagattgtcagatcaacttcgatct 5071268  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45040977 - 45041021
Alignment:
Q  1 tttgcttttctatcttgttacgatgtttgttcagttcagattgtc 45  Q
    ||||||||||| |||| ||||||||||| ||| ||||||||||||    
T  45040977 tttgcttttctgtcttattacgatgtttattcggttcagattgtc 45041021  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 39090269 - 39090343
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgtt 100  Q
    ||||||| |||||||||||||||||| ||||||||   |||||| ||||||||||| ||||| ||  ||||||||    
T  39090269 tttgttcggttcagattgtcatatcagcttcgatccagtgcaaatcaattcaatgactttggagtcatcaatgtt 39090343  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 4621196 - 4621101
Alignment:
Q  135 tatatagtcgaatttgtaggcttatgtactttgttgttttatgctattagtataactatagtgaatttgtagccagattcatcgtttttgttttta 230  Q
    |||||||||  |||||||||| ||||||||||||  |||||||||||||  || | | | |||| |||||   |||||||||| ||||||||||||    
T  4621196 tatatagtcatatttgtaggcatatgtactttgtcattttatgctattaacatgaatgttgtgagtttgttaacagattcatcctttttgttttta 4621101  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 21552278 - 21552231
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||||||||||||||| ||||||||| |||||    
T  21552278 atatagtcatatttgtaggcttatgtactttgctgttttatgttatta 21552231  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 29804502 - 29804455
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  ||||||||||||||||||||||  ||||||||||||||    
T  29804502 atatagtcatatttgtaggcttatgtactttgccgttttatgctatta 29804455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 32741049 - 32741096
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||| ||| |||||||||||||||||||||||    
T  32741049 atatagtcatatttgtaggcatatatactttgttgttttatgctatta 32741096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 37375870 - 37375823
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||| |||||||||||| ||||||||||||||    
T  37375870 atatagtcatatttgtaggcatatgtactttgtcgttttatgctatta 37375823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 45949502 - 45949459
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgct 179  Q
    ||||||||  |||||||||||||||||||||| |||||||||||    
T  45949502 atatagtcatatttgtaggcttatgtactttgctgttttatgct 45949459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 46025870 - 46025823
Alignment:
Q  136 atatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||||||  |||||||||| |||||||||||| ||||||||||||||    
T  46025870 atatagtcatatttgtaggcatatgtactttgtcgttttatgctatta 46025823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 5024989 - 5024832
Alignment:
Q  26 tttgttcagttcagattgtcatatcatcttcgatcttatgcaaaacaattcaatgattttggtgtggtcaatgttagagatctggagtcaagggtattct 125  Q
    ||||||| ||||||||||||| ||||  |||||||   | || | ||| ||||||| ||||| || |||||||||  ||||| |||| ||  ||||||||    
T  5024989 tttgttcggttcagattgtcagatcagattcgatccagtccagatcaaatcaatgactttggagtcgtcaatgttgcagatccggagacataggtattct 5024890  T
Q  126 aaacacttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
      | ||||  |||||||| ||| |||||||||  ||| ||||| |||| |||||||||    
T  5024889 ggagacttaaatatagtcaaatgtgtaggctttagtattttgtcgtttcatgctatta 5024832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 32312852 - 32312905
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  ||||| ||||||||||| ||||| ||||||||||||||    
T  32312852 acttgaatatagtcatatttggaggcttatgtagtttgtcgttttatgctatta 32312905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 38273189 - 38273242
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  |||||| ||| ||||||||||| |||||||||||||||    
T  38273189 acttgaatatagtcatatttgttggcatatgtactttgctgttttatgctatta 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 1996 - 2041
Alignment:
Q  137 tatagtcgaatttgtaggcttatgtactttgttgttttatgctatt 182  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||    
T  1996 tatagtcgtatttgtaggcatatgtactttgtcgttttatgctatt 2041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 1060 - 1113
Alignment:
Q  130 acttgtatatagtcgaatttgtaggcttatgtactttgttgttttatgctatta 183  Q
    ||||| ||||||||  || ||||||||| |||||||||| ||||||||||||||    
T  1060 acttgaatatagtcatatgtgtaggcttttgtactttgtcgttttatgctatta 1113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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