View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12472_high_6 (Length: 213)
Name: NF12472_high_6
Description: NF12472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12472_high_6 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 8139325 - 8139162
Alignment:
| Q |
50 |
tcaacagatgcgcttcaaaaacacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttt |
149 |
Q |
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| T |
8139325 |
tcaacagatgcgcttcaaaaacacagattcatcattcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttt |
8139226 |
T |
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| Q |
150 |
tacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatccatcat |
213 |
Q |
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| T |
8139225 |
tacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatccatcat |
8139162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 7502967 - 7503107
Alignment:
| Q |
70 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
164 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
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| Q |
165 |
gatttatacttaatgatcaagaaacataaaaaactgagaca |
205 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactgggaca |
7503107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 7499600 - 7499701
Alignment:
| Q |
50 |
tcaacagatgcgcttcaaaaacacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttt |
149 |
Q |
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| T |
7499600 |
tcaacagatgagcttcaaaa-cacagattcatcattcatagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttt |
7499698 |
T |
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| Q |
150 |
tac |
152 |
Q |
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||| |
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| T |
7499699 |
tac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 7499658 - 7499735
Alignment:
| Q |
130 |
aaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatc |
207 |
Q |
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| T |
7499658 |
aaataaatgataaagatttttagataaatgattaagatttttacttcatgatctagaaacataaaaaactgagacatc |
7499735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 7499560 - 7499590
Alignment:
| Q |
2 |
ttcaagcatgcattcagtaacaaagactcaa |
32 |
Q |
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| T |
7499560 |
ttcaagcatgcattcagtaacaaagactcaa |
7499590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
71 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
112 |
Q |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8139365 - 8139337
Alignment:
| Q |
1 |
attcaagcatgcattcagtaacaaagact |
29 |
Q |
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| T |
8139365 |
attcaagcatgcattcagtaacaaagact |
8139337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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