View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12472_low_2 (Length: 481)

Name: NF12472_low_2
Description: NF12472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12472_low_2
NF12472_low_2
[»] chr1 (12 HSPs)
chr1 (1-461)||(8138683-8139143)
chr1 (176-303)||(7670694-7670824)
chr1 (176-303)||(7708916-7709046)
chr1 (10-126)||(7499722-7499845)
chr1 (213-303)||(7709522-7709614)
chr1 (416-463)||(10136417-10136464)
chr1 (416-463)||(26926686-26926733)
chr1 (416-463)||(25844848-25844895)
chr1 (416-463)||(39199733-39199780)
chr1 (355-414)||(7670872-7670930)
chr1 (355-414)||(7709094-7709152)
chr1 (355-414)||(7709416-7709474)
[»] chr2 (13 HSPs)
chr2 (416-465)||(17967921-17967970)
chr2 (416-465)||(17974308-17974357)
chr2 (415-463)||(18345508-18345556)
chr2 (416-463)||(9184374-9184421)
chr2 (416-463)||(19891464-19891511)
chr2 (416-463)||(40846478-40846525)
chr2 (415-463)||(1933965-1934013)
chr2 (416-463)||(24536973-24537020)
chr2 (416-463)||(30652006-30652053)
chr2 (418-463)||(20101609-20101654)
chr2 (415-463)||(9179682-9179730)
chr2 (415-463)||(12798022-12798070)
chr2 (415-461)||(29678772-29678818)
[»] chr8 (9 HSPs)
chr8 (415-463)||(33417603-33417651)
chr8 (415-463)||(40124850-40124898)
chr8 (419-463)||(15950528-15950572)
chr8 (430-465)||(2966675-2966710)
chr8 (416-463)||(28559074-28559121)
chr8 (415-463)||(17027177-17027226)
chr8 (415-463)||(17557669-17557718)
chr8 (419-463)||(28564258-28564302)
chr8 (415-463)||(44924877-44924925)
[»] chr5 (16 HSPs)
chr5 (415-463)||(7452847-7452895)
chr5 (415-463)||(29166929-29166977)
chr5 (416-463)||(26668370-26668417)
chr5 (416-463)||(26939967-26940014)
chr5 (416-465)||(6154389-6154438)
chr5 (416-461)||(36430610-36430655)
chr5 (410-463)||(37247750-37247803)
chr5 (414-465)||(25668154-25668205)
chr5 (416-463)||(36424730-36424777)
chr5 (416-463)||(39519477-39519524)
chr5 (416-463)||(39524116-39524163)
chr5 (416-465)||(37646012-37646061)
chr5 (416-463)||(20180112-20180159)
chr5 (430-463)||(23757135-23757168)
chr5 (430-463)||(23822591-23822624)
chr5 (416-465)||(37536894-37536943)
[»] chr4 (15 HSPs)
chr4 (415-463)||(31728322-31728370)
chr4 (416-463)||(5270380-5270427)
chr4 (416-463)||(8694805-8694852)
chr4 (415-461)||(5925760-5925806)
chr4 (415-463)||(31274606-31274654)
chr4 (415-463)||(37258821-37258869)
chr4 (416-463)||(19907380-19907427)
chr4 (415-465)||(6943852-6943902)
chr4 (415-461)||(31766953-31766999)
chr4 (416-463)||(2820883-2820930)
chr4 (416-463)||(29349164-29349211)
chr4 (416-463)||(33467960-33468007)
chr4 (416-463)||(37263520-37263567)
chr4 (416-454)||(13064770-13064808)
chr4 (415-463)||(23094199-23094247)
[»] chr3 (11 HSPs)
chr3 (415-463)||(18473098-18473146)
chr3 (416-463)||(757321-757368)
chr3 (416-463)||(14437650-14437697)
chr3 (416-463)||(18468304-18468351)
chr3 (416-463)||(20521053-20521100)
chr3 (416-463)||(23660446-23660493)
chr3 (416-463)||(23665078-23665125)
chr3 (416-463)||(27710020-27710067)
chr3 (421-463)||(32473106-32473148)
chr3 (415-463)||(12970764-12970812)
chr3 (416-463)||(7570172-7570219)
[»] scaffold0054 (1 HSPs)
scaffold0054 (419-463)||(30269-30313)
[»] scaffold0002 (1 HSPs)
scaffold0002 (416-463)||(5156-5203)
[»] chr7 (7 HSPs)
chr7 (420-463)||(2595862-2595905)
chr7 (416-463)||(4931315-4931362)
chr7 (416-463)||(21672296-21672343)
chr7 (412-461)||(26342299-26342348)
chr7 (416-463)||(3046665-3046712)
chr7 (416-461)||(3881065-3881110)
chr7 (424-461)||(44508261-44508298)
[»] chr6 (8 HSPs)
chr6 (416-463)||(16835118-16835165)
chr6 (416-463)||(17963515-17963562)
chr6 (421-463)||(22694347-22694389)
chr6 (418-463)||(5857051-5857096)
chr6 (418-463)||(19994344-19994389)
chr6 (418-463)||(11429049-11429094)
chr6 (437-465)||(12405338-12405366)
chr6 (421-465)||(33686606-33686650)
[»] scaffold0352 (1 HSPs)
scaffold0352 (416-463)||(8201-8248)
[»] scaffold0240 (1 HSPs)
scaffold0240 (416-463)||(5061-5108)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 8139143 - 8138683
Alignment:
Q  1 catttatacaaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaa-caattagatgagagccacagaaactttagaact 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8139143 catttatacaaaactgagacataattccaaagtcagccatgtattaactgatagtgcatacataaaacaattagatgagagccacagaaactttagaact 8139044  T
Q  100 gttacggaagaataatttttcccattannnnnnnncttagcattcgaaatagagatcaaatagttttaattttgatttattataatagattttgattttg 199  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8139043 gttacggaagaataatttttcccattattttttttcttagcattcgaaatagagatcaaatagttttaattttgatttattataatagattttgattttg 8138944  T
Q  200 atacatttacttaaaacggattgtacgaaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgtgcatcc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8138943 atacatttacttaaaacggattgtacgaaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgtgcatcc 8138844  T
Q  300 catccttctttgggtctgctgtatatgcaaaatccctatctttctcggcaacatataaaggaaaactaaaaaccattcaaaaaacgctacacacatcaga 399  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8138843 aatccttctttgggtctgctgtatatgcaaaatccctatctttctcagcaacatataaaggaaatctaaaaaccattca-aaaacgctacacacatcaga 8138745  T
Q  400 agccataaagcaaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8138744 agccataaagcaaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 8138683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 7670694 - 7670824
Alignment:
Q  176 ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca 272  Q
    |||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  7670694 ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca 7670793  T
Q  273 agttggcatatgaagacatgtgcatcccatc 303  Q
    ||||||||||||||| |||||||||||||||    
T  7670794 agttggcatatgaaggcatgtgcatcccatc 7670824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 7708916 - 7709046
Alignment:
Q  176 ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca 272  Q
    |||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  7708916 ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca 7709015  T
Q  273 agttggcatatgaagacatgtgcatcccatc 303  Q
    ||||||||||||||| |||||||||||||||    
T  7709016 agttggcatatgaaggcatgtgcatcccatc 7709046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 7499722 - 7499845
Alignment:
Q  10 aaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaacaattaga-------tgagagccacagaaactttagaactgtt 102  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||||| |||||||||||||       | ||||||||||||||||||||||||||    
T  7499722 aaaactgagacatcattctaaaaccagccatgtattaacagatagtgcatatataaacaattagatcagacttcagagccacagaaactttagaactgtt 7499821  T
Q  103 acggaagaataatttttcccatta 126  Q
    |  |||||||||||||||||||||    
T  7499822 attgaagaataatttttcccatta 7499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 7709614 - 7709522
Alignment:
Q  213 aaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaagacatgtgcatcccatc 303  Q
    ||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||    
T  7709614 aaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaaggcatgtgcatcccatc 7709522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 10136464 - 10136417
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10136464 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 10136417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 26926686 - 26926733
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26926686 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 26926733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 25844895 - 25844848
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  25844895 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 25844848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 39199733 - 39199780
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||||    
T  39199733 tgttggaacattggtgtgatgtgggaagaaaaattggaagattaaaca 39199780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 7670872 - 7670930
Alignment:
Q  355 taaaggaaaactaaaaaccattcaaaaaacgctacacacatcagaagccataaagcaaac 414  Q
    ||||| ||||||||||||||| || ||| | ||||||||||||||||||||| |||||||    
T  7670872 taaagtaaaactaaaaaccatccataaa-cactacacacatcagaagccatagagcaaac 7670930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 7709094 - 7709152
Alignment:
Q  355 taaaggaaaactaaaaaccattcaaaaaacgctacacacatcagaagccataaagcaaac 414  Q
    ||||| ||||||||||||||| || ||| | ||||||||||||||||||||| |||||||    
T  7709094 taaagtaaaactaaaaaccatccataaa-cactacacacatcagaagccatagagcaaac 7709152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 7709474 - 7709416
Alignment:
Q  355 taaaggaaaactaaaaaccattcaaaaaacgctacacacatcagaagccataaagcaaac 414  Q
    ||||| ||||||||||||||| || ||| | ||||||||||||||||||||| |||||||    
T  7709474 taaagtaaaactaaaaaccatccataaa-cactacacacatcagaagccatagagcaaac 7709416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 17967921 - 17967970
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  17967921 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacatc 17967970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 17974308 - 17974357
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  17974308 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacatc 17974357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 18345556 - 18345508
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  18345556 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 18345508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 9184374 - 9184421
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  9184374 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 9184421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 19891464 - 19891511
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  19891464 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 19891511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 40846478 - 40846525
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  40846478 tgttggaacattggtgtgatgttggaagaaaaattggaagattaaaca 40846525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 1933965 - 1934013
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  1933965 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 1934013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 24536973 - 24537020
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||    
T  24536973 tgttggaacattggtgttatgttggaagaaaaattggaagattaaaca 24537020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 30652053 - 30652006
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  30652053 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 30652006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 20101609 - 20101654
Alignment:
Q  418 ttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||    
T  20101609 ttggaaaattggtgtgatgttggaagaaaaattggaagattaaaca 20101654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 9179682 - 9179730
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||| |||||||||||  |||| |||||||||||||||||||||    
T  9179682 ctgttggaatattgatgtgatggtggatgaaaaattggaagattaaaca 9179730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 12798070 - 12798022
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||| |||  |||||| |||||||||||||||||||||||||||    
T  12798070 ctgttggaatattagtgtgatgttggaagaaaaattggaagattaaaca 12798022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 29678818 - 29678772
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    |||||| ||||||  |||||| |||||||||||||||||||||||||    
T  29678818 ctgttgcaacattagtgtgatgttggaagaaaaattggaagattaaa 29678772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 33417651 - 33417603
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  33417651 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 33417603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 40124850 - 40124898
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  40124850 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 40124898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 15950528 - 15950572
Alignment:
Q  419 tggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||    
T  15950528 tggaacattgatgtgatgttggatgaaaaattggaagactaaaca 15950572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Complemental strand, 2966710 - 2966675
Alignment:
Q  430 tgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    |||||| |||||||||||||||||||||||||||||    
T  2966710 tgtgatgttggaagaaaaattggaagattaaacatc 2966675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 28559074 - 28559121
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||| |||||||| || || ||||||||||||||||||||||||    
T  28559074 tgttggaaaattgatgtaatgttcgaagaaaaattggaagattaaaca 28559121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 17027226 - 17027177
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaag-aaaaattggaagattaaaca 463  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  17027226 ctgttggaacattaatgtgatgttggatgaaaaaattggaagattaaaca 17027177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 17557718 - 17557669
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaag-aaaaattggaagattaaaca 463  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  17557718 ctgttggaacattaatgtgatgttggatgaaaaaattggaagattaaaca 17557669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 28564258 - 28564302
Alignment:
Q  419 tggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||| || | || |||||||||||||||||||||||||||    
T  28564258 tggaacattcatataatgttggaagaaaaattggaagattaaaca 28564302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 44924877 - 44924925
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||  |||||| |||||| | ||||||||||||||||||    
T  44924877 ctgttggaacattagtgtgatgttggaaaataaattggaagattaaaca 44924925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 7452895 - 7452847
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  7452895 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 7452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 29166929 - 29166977
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  29166929 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 29166977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 26668417 - 26668370
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26668417 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 26668370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 26940014 - 26939967
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26940014 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 26939967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 6154389 - 6154438
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  6154389 tgttggaacattgatgtgatgttggatgaaaaattggaaaattaaacatc 6154438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 36430655 - 36430610
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  36430655 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaa 36430610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 37247750 - 37247803
Alignment:
Q  410 caaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  37247750 caaaactgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 37247803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 25668154 - 25668205
Alignment:
Q  414 cctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||||||||    
T  25668154 cctgttggaacattggtgttgtgttggaagaaaaattggaagattaaacatc 25668205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 36424777 - 36424730
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||    
T  36424777 tgttggaacattgatgtgatgttggataaaaaattggaagattaaaca 36424730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 39519524 - 39519477
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  39519524 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 39519477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 39524163 - 39524116
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  39524163 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 39524116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 37646012 - 37646061
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    ||||||||||||||||||||  | || |||||||||||||||||||||||    
T  37646012 tgttggaacattgatgtgatgcttgatgaaaaattggaagattaaacatc 37646061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 20180112 - 20180159
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| ||||||  ||| ||||||||||||||||||||||    
T  20180112 tgttggaacattggtgtgatgctggtagaaaaattggaagattaaaca 20180159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 23757135 - 23757168
Alignment:
Q  430 tgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||| |||||||||||||||||||||||||||    
T  23757135 tgtgatgttggaagaaaaattggaagattaaaca 23757168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 23822591 - 23822624
Alignment:
Q  430 tgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||| |||||||||||||||||||||||||||    
T  23822591 tgtgatgttggaagaaaaattggaagattaaaca 23822624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 37536894 - 37536943
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    ||||||||||||||||||||  | || |||||||| ||||||||||||||    
T  37536894 tgttggaacattgatgtgatgcttgatgaaaaattagaagattaaacatc 37536943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 31728322 - 31728370
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  31728322 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 31728370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 5270380 - 5270427
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  5270380 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 5270427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 8694852 - 8694805
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  8694852 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 8694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 5925760 - 5925806
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  5925760 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaa 5925806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 31274654 - 31274606
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  31274654 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 31274606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 37258821 - 37258869
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  37258821 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 37258869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 19907427 - 19907380
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  19907427 tgttggaacattggtgtgatgttggaagaaaaattgaaagattaaaca 19907380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 6943902 - 6943852
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    |||||| ||||||  |||||| |||||||||||||||||||||||||||||    
T  6943902 ctgttgcaacattagtgtgatgttggaagaaaaattggaagattaaacatc 6943852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 31766999 - 31766953
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  31766999 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaa 31766953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 2820930 - 2820883
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| |||||  ||||||| |||||||||||||||||||    
T  2820930 tgttggaacattggtgtgaagttggaaggaaaattggaagattaaaca 2820883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 29349164 - 29349211
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| |||||| ||||||| |||| ||||||||||||||    
T  29349164 tgttggaacattggtgtgatgttggaaggaaaactggaagattaaaca 29349211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 33467960 - 33468007
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||  |||||| ||||||||||||||| |||||||||||    
T  33467960 tgttggaacattagtgtgatgttggaagaaaaattgaaagattaaaca 33468007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 37263520 - 37263567
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| || || ||||||||| |||||||||||    
T  37263520 tgttggaacattgatgtgatgtttgatgaaaaattgaaagattaaaca 37263567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 454
Target Start/End: Original strand, 13064770 - 13064808
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaa 454  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  13064770 tgttggaacattggtgtgatgttggaagaaaaattggaa 13064808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 23094247 - 23094199
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||  || ||| |||||||| |||||||||||    
T  23094247 ctgttggaacattgatgtgaagttagaaaaaaaattgaaagattaaaca 23094199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 18473146 - 18473098
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  18473146 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 18473098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 757321 - 757368
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  757321 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 757368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 14437650 - 14437697
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  14437650 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 14437697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 18468351 - 18468304
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  18468351 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 18468304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 20521100 - 20521053
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  20521100 tgttggaacattagtgtgatgttggaagaaaaattggaagattaaaca 20521053  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 23660446 - 23660493
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  23660446 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 23660493  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 23665078 - 23665125
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  23665078 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 23665125  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 27710067 - 27710020
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||    
T  27710067 tgttggaacattgatgtgatgttgaatgaaaaattggaagattaaaca 27710020  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 32473106 - 32473148
Alignment:
Q  421 gaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  32473106 gaacattgatgtgatattggatgaaaaattggaagattaaaca 32473148  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 12970764 - 12970812
Alignment:
Q  415 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||| |||| ||||| ||||||| |||||||||||||    
T  12970764 ctgttggaacattgatatgatgttggatgaaaaatcggaagattaaaca 12970812  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 7570172 - 7570219
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  7570172 tgttggaacattaatgtgatgttggatgaaaaattgaaagattaaaca 7570219  T

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Target: scaffold0054 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 30313 - 30269
Alignment:
Q  419 tggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||    
T  30313 tggaacattgatgtgatgttggatgaaaaattggaagattaaaca 30269  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 5203 - 5156
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  5203 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 5156  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 420 - 463
Target Start/End: Complemental strand, 2595905 - 2595862
Alignment:
Q  420 ggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  2595905 ggaacattgatgtaatgttggaagaaaaattggaagattaaaca 2595862  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 4931362 - 4931315
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  4931362 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 4931315  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 21672343 - 21672296
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  21672343 tgttggaacattggtgtgatgttggaagaaaaattggaagaataaaca 21672296  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 26342348 - 26342299
Alignment:
Q  412 aacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    |||||||||||||||| ||||||| ||||| |||||||| ||||||||||    
T  26342348 aacctgttggaacattaatgtgatgttggatgaaaaattcgaagattaaa 26342299  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 3046712 - 3046665
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||| ||||||| |||||| ||||||||||||||| |||||||||||    
T  3046712 tgttgaaacattggtgtgatgttggaagaaaaattgaaagattaaaca 3046665  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 3881110 - 3881065
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    |||||||| | |||| |||| |||||||||||||||||||||||||    
T  3881110 tgttggaatagtgatctgatgttggaagaaaaattggaagattaaa 3881065  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 44508261 - 44508298
Alignment:
Q  424 cattgatgtgatcttggaagaaaaattggaagattaaa 461  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  44508261 cattgatgtgatgttggatgaaaaattggaagattaaa 44508298  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 16835118 - 16835165
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  16835118 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaaca 16835165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 17963515 - 17963562
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  17963515 tgtttgaacattgatgtgatgttggatgaaaaattggaagattaaaca 17963562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 22694347 - 22694389
Alignment:
Q  421 gaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  22694347 gaacattggtgtgatgttggaagaaaaattggaagattaaaca 22694389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 5857096 - 5857051
Alignment:
Q  418 ttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||    
T  5857096 ttggaacattagtgtgatgttggaagaaaaattggaagattaaaca 5857051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 19994344 - 19994389
Alignment:
Q  418 ttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||    
T  19994344 ttggatcattggtgtgatgttggaagaaaaattggaagattaaaca 19994389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 11429094 - 11429049
Alignment:
Q  418 ttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||  | ||||| |||||||||||||||||||||    
T  11429094 ttggaacattgatgtacttttggatgaaaaattggaagattaaaca 11429049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 465
Target Start/End: Original strand, 12405338 - 12405366
Alignment:
Q  437 ttggaagaaaaattggaagattaaacatc 465  Q
    |||||||||||||||||||||||||||||    
T  12405338 ttggaagaaaaattggaagattaaacatc 12405366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 33686606 - 33686650
Alignment:
Q  421 gaacattgatgtgatcttggaagaaaaattggaagattaaacatc 465  Q
    ||||||| ||||||| |||||| | ||||||||||||||||||||    
T  33686606 gaacattaatgtgatgttggaaaataaattggaagattaaacatc 33686650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 8248 - 8201
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    |||||||||||||||| ||| ||||| || ||||||||||||||||||    
T  8248 tgttggaacattgatgcgatgttggatgataaattggaagattaaaca 8201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 5108 - 5061
Alignment:
Q  416 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 463  Q
    ||||||| ||||| |||||| ||||||||||||||| |||||||||||    
T  5108 tgttggatcattggtgtgatgttggaagaaaaattgaaagattaaaca 5061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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