View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12472_low_4 (Length: 267)

Name: NF12472_low_4
Description: NF12472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12472_low_4
NF12472_low_4
[»] chr5 (3 HSPs)
chr5 (50-254)||(28477496-28477694)
chr5 (52-91)||(10272486-10272525)
chr5 (50-96)||(34205213-34205259)
[»] chr1 (5 HSPs)
chr1 (57-96)||(23445315-23445354)
chr1 (50-96)||(17269224-17269270)
chr1 (50-96)||(25006084-25006130)
chr1 (50-91)||(7218129-7218170)
chr1 (51-96)||(27976570-27976615)
[»] chr6 (4 HSPs)
chr6 (50-96)||(4006688-4006734)
chr6 (50-96)||(31776325-31776371)
chr6 (50-91)||(6909927-6909968)
chr6 (5-42)||(32917158-32917195)
[»] chr3 (6 HSPs)
chr3 (50-120)||(48397620-48397690)
chr3 (50-96)||(1816557-1816603)
chr3 (50-90)||(30956682-30956722)
chr3 (50-90)||(30972494-30972534)
chr3 (50-94)||(32555033-32555077)
chr3 (50-94)||(35450564-35450608)
[»] chr8 (3 HSPs)
chr8 (50-96)||(778638-778684)
chr8 (50-92)||(2482839-2482881)
chr8 (51-83)||(10218915-10218947)
[»] chr7 (3 HSPs)
chr7 (50-96)||(1417238-1417284)
chr7 (50-96)||(12110334-12110380)
chr7 (50-96)||(44821933-44821979)
[»] chr4 (3 HSPs)
chr4 (50-96)||(52746890-52746936)
chr4 (55-91)||(2465974-2466010)
chr4 (60-96)||(42121472-42121508)
[»] chr2 (5 HSPs)
chr2 (50-96)||(11513872-11513918)
chr2 (50-88)||(36114581-36114619)
chr2 (50-95)||(9750920-9750965)
chr2 (50-87)||(43199852-43199889)
chr2 (50-90)||(41851509-41851549)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 28477496 - 28477694
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagctcattcaaatagtctcactaatgctgtctatagtctacatataaacttaaacaa 149  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |   ||| ||||||| |||||||||||||     
T  28477496 taaagtcaaaatgtttttgtataagctataagtt-ttttcatgagctcactcaaatagtctcactaatgtt---tat-gtctacagataaacttaaacat 28477590  T
Q  150 gtcaatccaaacatatatgtagatatttagctttcacaagaattgcgtatagataaaaaactgaacctacattggacatccattcagtgacttctttgac 249  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||    
T  28477591 gtcaaaccatacatatatgtagatatt-agctttcacaagaactgcgtatagagaaaaaagtgaacctacattggacatccattcggtgacttctttgac 28477689  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 10272525 - 10272486
Alignment:
Q  52 aagtcaaattgtttttgtataagccataagttgttttcat 91  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  10272525 aagtcaaattgttttcgtataagctataagttgttttcat 10272486  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 34205213 - 34205259
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| ||||    
T  34205213 taaagtcaaattatttttatataagctataagttgttttcataagct 34205259  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 23445315 - 23445354
Alignment:
Q  57 aaattgtttttgtataagccataagttgttttcatgagct 96  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  23445315 aaattgtttttgtataagccataagttgttttcataagct 23445354  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 17269224 - 17269270
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  17269224 taaagtcaaattgttttcatataagcaataagttgttttcataagct 17269270  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 25006130 - 25006084
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  25006130 taaagtcaaattgttttcatataagctataagttgttttcataagct 25006084  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 7218170 - 7218129
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcat 91  Q
    |||||||||||||||||  ||||||| |||||||||||||||    
T  7218170 taaagtcaaattgttttcatataagctataagttgttttcat 7218129  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 27976570 - 27976615
Alignment:
Q  51 aaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    ||||| |||||||||||||||| || ||||||||||||||| ||||    
T  27976570 aaagttaaattgtttttgtatatgctataagttgttttcataagct 27976615  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 4006688 - 4006734
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  4006688 taaagtcaaattgtttttatataagctataagttgttttcataagct 4006734  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 31776371 - 31776325
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    ||||||||||||||||||||||||   ||||||||||||||| ||||    
T  31776371 taaagtcaaattgtttttgtataattaataagttgttttcataagct 31776325  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 6909968 - 6909927
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcat 91  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  6909968 taaagttaaattgtttttgtatatgctataagttgttttcat 6909927  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 32917158 - 32917195
Alignment:
Q  5 taagtccttatgtataatctatttcaatagcaaaagat 42  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  32917158 taagtgcttatgtataagctatttcaatagcaaaagat 32917195  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 48397620 - 48397690
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagctcattcaaatagtctcactaatgct 120  Q
    |||||||||||||||||| | ||||| ||||||||||||||| ||||| | |||| | |||||| ||||||    
T  48397620 taaagtcaaattgtttttatttaagctataagttgttttcattagctcttccaaacaatctcacaaatgct 48397690  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 1816557 - 1816603
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  1816557 taaagtcaaactgtttttgtataagatataagttgttttcataagct 1816603  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 30956722 - 30956682
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttca 90  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  30956722 taaagttaaattgtttttgtataggctataagttgttttca 30956682  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 30972534 - 30972494
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttca 90  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  30972534 taaagttaaattgtttttgtataggctataagttgttttca 30972494  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 32555077 - 32555033
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgag 94  Q
    |||||||||||| ||||  ||||||| ||||||||||||||||||    
T  32555077 taaagtcaaattattttcctataagctataagttgttttcatgag 32555033  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 35450564 - 35450608
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgag 94  Q
    |||||| ||||||||||  ||||||| ||||||||||||||||||    
T  35450564 taaagtaaaattgttttcttataagctataagttgttttcatgag 35450608  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 778684 - 778638
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||| |||| | ||||||| |||||||||||||||||||||    
T  778684 taaagtcaaaatgttgtcgtataagtcataagttgttttcatgagct 778638  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 2482839 - 2482881
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatg 92  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||    
T  2482839 taaagtcaaaatgtttttgtataagctataagctgttttcatg 2482881  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 10218915 - 10218947
Alignment:
Q  51 aaagtcaaattgtttttgtataagccataagtt 83  Q
    ||||||||||||||||||||||||| |||||||    
T  10218915 aaagtcaaattgtttttgtataagctataagtt 10218947  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 1417238 - 1417284
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  1417238 taaagtcaaattgttttcatataagcaataagttgttttcataagct 1417284  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 12110334 - 12110380
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| ||||    
T  12110334 taaagtcaaattgttttggtataagctataagctgttttcataagct 12110380  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 44821933 - 44821979
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||||||||||||||||  ||||| ||||||||| ||||    
T  44821933 taaagtcaaattgtttttgtataagttataagctgttttcataagct 44821979  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 52746936 - 52746890
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||| ||||||||||||| ||||||||||| ||||||||| ||||    
T  52746936 taaagttaaattgtttttgtgtaagccataagctgttttcataagct 52746890  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 2466010 - 2465974
Alignment:
Q  55 tcaaattgtttttgtataagccataagttgttttcat 91  Q
    |||| |||||||||||||||| |||||||||||||||    
T  2466010 tcaatttgtttttgtataagctataagttgttttcat 2465974  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 42121472 - 42121508
Alignment:
Q  60 ttgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  42121472 ttgtttctgtataagctataagttgttttcatgagct 42121508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 11513872 - 11513918
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagct 96  Q
    |||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  11513872 taaagtcaaattgttttcatataagctataagttgttttcataagct 11513918  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 36114619 - 36114581
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgtttt 88  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  36114619 taaagttaaattgtttttgtataagcaataagttgtttt 36114581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 9750920 - 9750965
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttcatgagc 95  Q
    |||||| ||||||||||  ||||||| |||||||||||||||||||    
T  9750920 taaagttaaattgttttcttataagctataagttgttttcatgagc 9750965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 43199889 - 43199852
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttt 87  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  43199889 taaagttaaattgtttttgtataagctataagttgttt 43199852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 41851509 - 41851549
Alignment:
Q  50 taaagtcaaattgtttttgtataagccataagttgttttca 90  Q
    |||||| |||||||||||||||| || ||||||||||||||    
T  41851509 taaagttaaattgtttttgtatatgctataagttgttttca 41851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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